Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq2 367 2e-96 seq14858 192 8e-44 seq14857 129 8e-25 seq14 105 9e-18 >seq2 Length=4461408 Score = 367 bits (406), Expect = 2e-96 Identities = 1042/1590 (66%), Gaps = 11/1590 (1%) Strand=Plus/Plus Query 195293 TCTCAAGCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAAT 195352 |||| ||| | ||||| || | || || || || || || || ||||| ||| | || Sbjct 3484265 TCTCCTGCTGTGGGTATTGACCTTGGCACCACCTATTCTTGCGTAGGTGTGTGGAAGAAC 3484324 Query 195353 GATCGTGTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCC 195412 ||| ||| || || ||| |||| ||||| |||||| | || || || || ||||| || Sbjct 3484325 GATGCTGTGGAAATCATCGCGAACGACCAGGGAAACAGGACGACCCCGTCCTACGTCGCG 3484384 Query 195413 TTTACAGATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCT 195472 || || || | || | || || || ||||| || || || || || ||||| Sbjct 3484385 TTCACCGACACGGAGAGACTTGTCGGTGATGCTGCGAAGAACCAAGTCGCACGCAACCCG 3484444 Query 195473 ATCAATACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTC 195532 || || | || || || ||||| || || || ||||||||| || ||| Sbjct 3484445 GAAAACACCATTTTCGATGCCAAGCGCCTAATCGGCCGCAAGTTTGATGACCCCTCGGTC 3484504 Query 195533 CAAGACGATATAAAGGACTGGTCTTATGAAGTTGTTCCC-GGTGTGGCTGATAAGCCTAT 195591 || || || ||| | ||| | | | ||| | || | ||| || || ||||| | Sbjct 3484505 CAGTCGGACATGAAGCATTGGCCAT-TCAAGGTCATCGCTGGTCCGGGAGACAAGCCCCT 3484563 Query 195592 GATTAATGTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTAT 195651 ||| | || | || || |||||||| || |||||||| |||| | || Sbjct 3484564 CATTGAAGTCACGTACCAGGGAGAGAAGAAGACGTTCCACCCCGAAGAGGTTTCCGCCAT 3484623 Query 195652 GGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGC 195711 ||||||| || |||||||| | ||||| ||| | | || || ||||| || || Sbjct 3484624 GGTGTTGGGCAAAATGAAGGAAATCGCGGAGGCTTACCTCGGCAAGGAAGTGAAGGAGGC 3484683 Query 195712 AGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGC 195771 || | || || || || ||||||| ||||| || || ||||| || ||||| |||| Sbjct 3484684 CGTCATTACCGTCCCCGCGTACTTCAACGATTCGCAGCGTCAGGCTACCAAGGATGCTGG 3484743 Query 195772 TGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGC 195831 | | ||||| || || | | || | |||||||| || || |||||||| || || || Sbjct 3484744 TACCATTGCCGGCCTCAGCGTCCTCCGTATTATCAACGAGCCTACAGCGGCAGCCATCGC 3484803 Query 195832 TTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGG 195891 ||||||||||||||||| || || | || || | ||||| || | ||||| Sbjct 3484804 CTATGGTCTGGACAAGAAGGGCTGCGGTGAGATGAACGTCCTCATCTTCGACATGGGTGG 3484863 Query 195892 TGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTAC 195951 ||||| || ||||| || || || | || |||| ||||| || ||||| ||||| || Sbjct 3484864 CGGTACTTTCGATGTGTCGCTGCTTACAATCGAAGACGGTATCTTTGAAGTCAAGGCCAC 3484923 Query 195952 TGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATTTGTC 196011 ||||||||||| ||||| ||||||||||||||||| ||| || | | | || Sbjct 3484924 CGCTGGTGATACCCATCTTGGTGGTGAAGATTTCGACAACCGT-TTGGTGGACTTCTGCG 3484982 Query 196012 T-GATGAGTTCCGTCGAAAGAA--TAAGAAAGATATTTCTGGA--AATCCTAGGGCTCTT 196066 | | || ||| || ||||| ||||| | || | | || | || ||| Sbjct 3484983 TCCAGGACTTCAAGCGCAAGAACCGCGGAAAG-GACATCAGCACCAACAGCCGTGCCCTT 3485041 Query 196067 CGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACA 196126 |||||||| | || || || || |||| ||||||||||| | |||| || Sbjct 3485042 CGTCGGCTGCGTACCCAGTGCGAGCGCACCAAGAGAACTCTCTCTAGCAGCACTCAGGCA 3485101 Query 196127 ATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCA 196186 | | || ||||| || | || || || ||||||| || | |||| ||||||| Sbjct 3485102 ACCATCGAAATTGACTCTCTTTTCGAGGGCATTGACTACTCTGTGTCTATCTCCCGTGCG 3485161 Query 196187 CGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTA 196246 |||||||| ||| | | || | || | || | || || || || | || Sbjct 3485162 CGTTTTGAGGAGCTTTGCATGGACTACTTCCGCAACTCCTTGTTGCCCGTCGAGAAGGTC 3485221 Query 196247 CTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCA 196306 || ||| | || || ||| | ||| ||| |||| | || || ||||| Sbjct 3485222 CTCAAGGACTCTGGTATTGACAAGCGTTCGGTCAGCGAAGTTGTGTTGGTTGGTGGATCT 3485281 Query 196307 ACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAAC 196366 |||||||| || ||||| || ||| | | || ||||||||| || || | Sbjct 3485282 ACCCGTATCCCCAAGATCCAGCAGCTCATCACTGACTTCTTCAACGGAAAGGAGCCGTGC 3485341 Query 196367 AAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTC 196426 | |||||||||| ||||| || ||||| || ||||| || || ||||| || || | Sbjct 3485342 AGGTCGATCAACCCTGATGAGGCCGTTGCGTACGGTGCTGCTGTCCAGGCAGCGATCTTG 3485401 Query 196427 TCAGGTGTTGACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCC 196486 || ||| || | || || ||| | || || || |||||||| ||| | || Sbjct 3485402 AAGGGAGTTACCAGCTCCCAAGTGCAGGATTTGCTTCTTCTGGATGTTGCGCCCCTCTCT 3485461 Query 196487 CTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATT 196546 || ||||| || ||||| |||||||| ||||| || | ||||| || |||||||| || Sbjct 3485462 CTCGGTCTGGAGACAGCTGGTGGTGTCATGACCAAGCTGATTGAGAGAAACACAACGATC 3485521 Query 196547 CCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATT 196606 |||||||||||| || ||| ||||||| | || || || ||||| || | ||| Sbjct 3485522 CCGACTAAGAAGTCTCAGACCTTCACAACGTACGCGGACAACCAGCCAGGAGTGCTGATT 3485581 Query 196607 CAAGTATATGAAGGAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACTTTCGA 196665 || || || ||||| || || | | || | || || ||| | || || || | ||| | Sbjct 3485582 CAGGTGTACGAAGGTGAGCG-TGCGATGACCAAAGACAACAACCTCCTGGGCAAATTCCA 3485640 Query 196666 TTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATAT 196725 ||| || || || | || ||| | ||||| || || || | || || ||||| Sbjct 3485641 CTTGGATGGTATCCCCCCCGCCCCCCGTGGTGTCCCCCAAATCGAAGTCACTTTTGATAT 3485700 Query 196726 AGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAA 196785 ||||| || || || | |||||||| || | |||||| | | || || | | Sbjct 3485701 CGACGCTAACGGTATCATGAACGTCACGGCGCAAGACAAGTCCACCGGAAAGAGCAACCA 3485760 Query 196786 GATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCA 196845 || || ||||| |||||||| || || | | ||||| || || ||||| || Sbjct 3485761 AATCACCATCACCAACGACAAGGGCCGCCTCAGTGCGTCCGAAATCGACCGCATGGTGCA 3485820 Query 196846 AGATGCGGAAAAGTACAGGGAAGAAGACGA 196875 ||| || || ||||||| || |||||||| Sbjct 3485821 AGAGGCAGAGAAGTACAAGGCCGAAGACGA 3485850 >seq14858 Length=1827956 Score = 192 bits (212), Expect = 8e-44 Identities = 180/229 (79%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| || ||||| ||||| |||||||| || || |||||| ||||| Sbjct 1581438 ATGCAGATCTTTGTGAAGACTCTTACCGGAAAGACTATCACGCTTGATGTTGAGCCGTCA 1581497 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || | || || ||||| || || |||||||| ||||| || |||||| Sbjct 1581498 GACACCATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGTATTCCCCCTGATCAG 1581557 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || ||||||||||| || ||| | || || || || || || |||| |||||| Sbjct 1581558 CAGCGTCTGATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGAACTCTGTCTGACTACAAC 1581617 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGTG 172090 |||| |||||||| ||||| ||| | || | | ||||| ||||||| Sbjct 1581618 ATTCAGAAGGAGTCGACTCTCCACTTGGTCTTGCGTCTTCGTGGTGGTG 1581666 Score = 185 bits (204), Expect = 1e-41 Identities = 169/212 (80%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| || ||||| ||||| || ||||| || || |||||| ||||| Sbjct 1580914 ATGCAGATCTTTGTGAAGACTCTTACCGGAAAGACCATCACGCTTGATGTTGAGCCGTCA 1580973 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || | || || ||||| || || |||||||| ||||| || |||||| Sbjct 1580974 GACACCATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGTATTCCCCCTGATCAG 1581033 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || ||||||||||| || ||| | ||||| || || || || |||| |||||| Sbjct 1581034 CAGCGTCTGATTTTTGCTGGCAAGCAGTTGGAAGACGGCCGAACTCTGTCTGACTACAAC 1581093 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 |||| |||||||| ||||| || |||| ||| Sbjct 1581094 ATTCAGAAGGAGTCGACTCTCCA-CTTGGTCT 1581124 Score = 181 bits (200), Expect = 1e-40 Identities = 168/212 (79%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| || ||||| ||||| || ||||| || || |||||| ||||| Sbjct 1580057 ATGCAGATCTTTGTGAAGACTCTTACCGGAAAGACCATCACGCTTGATGTTGAGCCGTCA 1580116 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || | || || ||||| || || |||||||| ||||| || |||||| Sbjct 1580117 GACACCATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGTATTCCCCCTGATCAG 1580176 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || ||||||||||| || ||| | || || || || || || |||| |||||| Sbjct 1580177 CAGCGTCTGATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGAACTCTGTCTGACTACAAC 1580236 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 |||| |||||||| ||||| || |||| ||| Sbjct 1580237 ATTCAGAAGGAGTCGACTCTCCA-CTTGGTCT 1580267 Score = 181 bits (200), Expect = 1e-40 Identities = 168/212 (79%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| || ||||| ||||| || ||||| || || |||||| ||||| Sbjct 1580686 ATGCAGATCTTTGTGAAGACTCTTACCGGAAAGACCATCACGCTTGATGTTGAGCCGTCA 1580745 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || | || || ||||| || || |||||||| ||||| || |||||| Sbjct 1580746 GACACCATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGTATTCCCCCTGATCAG 1580805 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || ||||||||||| || ||| | || || || || || || |||| |||||| Sbjct 1580806 CAGCGTCTGATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGAACTCTGTCTGACTACAAC 1580865 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 |||| |||||||| ||||| || |||| ||| Sbjct 1580866 ATTCAGAAGGAGTCGACTCTCCA-CTTGGTCT 1580896 Score = 118 bits (130), Expect = 1e-21 Identities = 101/125 (81%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| || ||||| ||||| || ||||| || || |||||| ||||| Sbjct 1580285 ATGCAGATCTTTGTGAAGACTCTTACCGGAAAGACCATCACGCTTGATGTTGAGCCGTCA 1580344 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || | || || ||||| || || |||||||| ||||| || |||||| Sbjct 1580345 GACACCATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGTATTCCCCCTGATCAG 1580404 Query 171982 CAACG 171986 || || Sbjct 1580405 CAGCG 1580409 >seq14857 Length=2032611 Score = 129 bits (142), Expect = 8e-25 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || || ||||| || || || || || || ||||| | || || ||| | || Sbjct 1173330 ATGCAGATTTTCGTGAAGACGCTCACCGGCAAGACGATCACTTTGGACGTCGAGCCTTCT 1173389 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || |||| ||||||||||| |||||||| || ||||| || || ||| Sbjct 1173390 GACACCATCGAAAATGTCAAGGCCAAGATTCAGGATAAGGAGGGAATTCCGCCTGACCAG 1173449 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || || || || || || ||||| || || || | ||||| | || |||||| Sbjct 1173450 CAGCGTCTGATCTTCGCAGGCAAGCAGCTCGAGGACGGCAGAACCCTTTCCGACTACAAC 1173509 Query 172042 GTTCAAAAGGAGTCTACTCTACAC 172065 | || ||||| || ||||| ||| Sbjct 1173510 ATCCAGAAGGAATCCACTCTCCAC 1173533 >seq14 Length=1276701 Score = 105 bits (116), Expect = 9e-18 Identities = 137/188 (73%), Gaps = 6/188 (3%) Strand=Plus/Plus Query 195728 GCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTA 195787 |||||||||| || | || |||||||| || |||||||| | ||| ||||| || | Sbjct 631351 GCTTACTTCAACGACGCTCAGCGACAGGCCACCAAGGACGCCGGTGCGATTGCTGGCTTG 631410 Query 195788 AACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAG 195847 ||| | | | || ||||| || || || || ||||| ||||| || |||||||||||| Sbjct 631411 AACGTTATCCGTATCATCAACGAGCCGACCGCTGCTGCTATTGCGTACGGTCTGGACAAG 631470 Query 195848 AACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTC 195907 || || || ||||| | | | | | ||||| ||||||||||| ||||||||| Sbjct 631471 AAGAACGA-GAAGACCA-----TCCTCGTGTACGATCTTGGTGGTGGTACTTTTGATGTC 631524 Query 195908 TCACTTCT 195915 || |||| Sbjct 631525 TCTGTTCT 631532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657740193835920