Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_020866.1 Length=40231 Score E Sequences producing significant alignments: (Bits) Value seq6292 113 1e-20 >seq6292 Length=326 Score = 113 bits (124), Expect = 1e-20 Identities = 136/181 (75%), Gaps = 7/181 (4%) Strand=Plus/Plus Query 39910 CTGGAGTTTTCCGCTAA-GTTTCCCTGGCTGGGAGAGGAGCGGAATCGCATGAAGGCATC 39968 ||||| |||||| | | | | ||||| ||| |||||| | || |||||||||||| Sbjct 96 CTGGAATTTTCCAATTATGATCCCCTGTTGGGGCGAGGAGAGT--TC-CATGAAGGCATC 152 Query 39969 GAAGTTCACAGAGGCGCAGAAGGCGTTCATCCTGAAGCAGGGCGAGGAAGGCACGCCGGT 40028 ||||||||| ||||| |||| ||||| | ||||||||| ||||| || |||||||| Sbjct 153 GAAGTTCACCGAGGCACAGATCGCGTTTGTTTTGAAGCAGGCGGAGGACGGGACGCCGGT 212 Query 40029 CGCAAAGATCTGCCGCAAGGCCGGGATCAGCTAGGCGGCCTACTTCAACTGG---AAGAA 40085 || || ||||||| ||||| || ||||| | ||| | | || ||||||| ||||| Sbjct 213 TGCCGAGGTCTGCCGGAAGGCGGGCATCAGTGACGCGACGTTCTACAACTGGCGCAAGAA 272 Query 40086 G 40086 | Sbjct 273 G 273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128594902289426