Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_021073.1 Length=107218 Score E Sequences producing significant alignments: (Bits) Value seq2293 260 9e-65 seq4204 109 4e-19 >seq2293 Length=1342 Score = 260 bits (288), Expect = 9e-65 Identities = 339/466 (73%), Gaps = 2/466 (0%) Strand=Plus/Plus Query 10934 CAAACAAAAAACGACCAACTGAAGGAGCCGATGTTCTTCGGCCAATCAGTTAACGTATCC 10993 |||| |||||| |||| | ||| |||||||| ||||| || || |||||||| | Sbjct 679 CAAAACAAAAACAACCAGTTACTGGAACCGATGTTTTTCGGTCAGTCGGTTAACGTTGCG 738 Query 10994 CGTTACGACCAACAGAAACATGATGTTTTTGAGAAACTAACTCAGAAGCAACTATCATTC 11053 |||| ||| || || |||||||| |||| || ||||| | | |||| || || || ||| Sbjct 739 CGTTTCGATCAGCAAAAACATGAAATTTTCGAAAAACTGATTGAGAAACAGCTGTCTTTC 798 Query 11054 TTCTGGCGTCCCGAAGAAGTTGATGTGTCACAAGACCGAATCGACTA-CAGTAAAATGAC 11112 ||||||||||| ||||||||||| || || | ||||| || ||||| ||| | || | Sbjct 799 TTCTGGCGTCCTGAAGAAGTTGACGTCTCCCGCGACCGTATTGACTATCAG-GCACTGCC 857 Query 11113 TGATGCGGAGAAACACATCTTCATTAGTAACCTGAAGTACCAAACATTACTCGACTCGAT 11172 ||| ||||||||||| ||||| || || ||||| ||||| || | | || ||||| Sbjct 858 GGATCATGAGAAACACATTTTCATCAGCAATCTGAAATACCAGACGCTGTTGGATTCGAT 917 Query 11173 CCAAGGCCGTAGCCCGAATATGGCGTTCCTGCCTATTGTGTCACTACCAGAAGTCGAAAC 11232 || ||||| |||||||| |||| || |||| | | ||| | || ||| | ||||| Sbjct 918 TCAGGGCCGCAGCCCGAACGTGGCCTTGTTGCCGCTGATCTCAATCCCGGAACTGGAAAC 977 Query 11233 TTGGGTAGAAACGTGGAGCTTCAGCGAAACCATCCACTCTCGTTCATACACACACATCAT 11292 ||||| ||||| ||| ||| ||| ||||||||||| ||||| || || || || || Sbjct 978 CTGGGTGGAAACCTGGTCATTCTCCGAGACCATCCACTCCCGTTCTTATACCCATATTAT 1037 Query 11293 TCGCAATATTGTCAATGACCCTAGTATTGTGTTCGATGATGTTGTTGAGAATAAGCACAT 11352 || ||||| ||||| || || || || || |||||| | || || | | || Sbjct 1038 CCGTAATATCGTCAACGATCCGGCGATCGTATTTGATGATATCGTCACCAACGAAGAGAT 1097 Query 11353 CCTAGAGCGAGCTAAAGATATTGCTCGTTACTACGACGATCTCATC 11398 ||| |||| || ||||| ||| | | |||||||||||||| ||| Sbjct 1098 CCTCAAGCGCGCGAAAGACATTTCCGGCTACTACGACGATCTGATC 1143 Score = 125 bits (138), Expect = 5e-24 Identities = 290/433 (67%), Gaps = 7/433 (2%) Strand=Plus/Plus Query 10435 GTTGCGTAATGAGATTGTCCATAATGGCCTACGTAACTCTACTCTATCTGCATTCATGCC 10494 ||||||||| ||||| || | | || || |||||||| || || || || | ||||| Sbjct 100 GTTGCGTAAAGAGATCGTGGAAACCGGTCTGCGTAACTCCACCCTGTCAGCGCTGATGCC 159 Query 10495 TTCGGAAACATCTTCTCAGGTATCTAACGCAACAAACGGCATCGAACCACCTCGTGGCTA 10554 ||||||||| ||||| ||| | || ||||| || |||||||| || ||||| |||||| | Sbjct 160 TTCGGAAACCTCTTCGCAGATTTCCAACGCCACCAACGGCATTGAGCCACCACGTGGCCA 219 Query 10555 CATGTCAGT---TAAGCAGTCGAAGGATGGCA-TCTTAAAACAAATCGTACCGGGTTATG 10610 || ||||| |||| |||||| || || | | || || | || || | |||| Sbjct 220 CA--TCAGTATCAAAGC-GTCGAAAGACGGTATTTTTGCGCCAGGTAGTGCCAGAATATG 276 Query 10611 ATAAATACAAAGACCAATACGAGTTACTATGGAATATCAAAGACAACACTGGTTACTTGG 10670 | ||| || | ||||| | || ||| | || ||||| |||||| || Sbjct 277 AGCGTCTGAAAAACGACTACGAACTGCTGTGGGAAATGCCGAACAACGACGGTTACCTGC 336 Query 10671 AATTGGTTGCCATCATGCAGAAGTTTGTGGATCAGGCTATTTCAGCAAACACTAACTACG 10730 || |||| | | |||||||| ||| | || ||| | ||||| || ||||| ||||| | Sbjct 337 AACTGGTCGGTCTGATGCAGAAATTTATCGACCAGTCGATTTCTGCCAACACCAACTATG 396 Query 10731 ACCCAGAAAACTACCCAGAAAGTAAGGTTCCAATCAAAAAGTTATTGCAAGATTTGGTGA 10790 | || | ||| | | ||||| || || || || | ||| |||| || | | Sbjct 397 ATCCGACCCGTTTCCCTGGCGGCAAGGTGCCTATGAAGCAGCTGTTGAAAGACCTGCTCA 456 Query 10791 CATGTTATAGACTCGGCATCAAGACACTGTACTACCACAACACACGAGATGGTGCTAGTG 10850 | || | | || ||||||| ||||| || || ||||| || || ||||| | Sbjct 457 CCACCTACAAGTTTGGTGTCAAGACGCTGTATTATCAGAACACCCGCGACGGTGCAGAAG 516 Query 10851 ATGAACAGAAAGA 10863 ||| ||| |||| Sbjct 517 ATGTCCAGGAAGA 529 >seq4204 Length=800 Score = 109 bits (120), Expect = 4e-19 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 6172 GGCGTAATTCATTTCCATGATATGGATGAGTCGCCGTTCTACCCGATGTTCAACTGCTGT 6231 |||| || || | ||| ||| | ||| | ||||| |||| ||| |||||||||||| Sbjct 565 GGCGAGATCCACTACCACGATCTCGATTACTCGCCCTTCTTCCCTATGTTCAACTGCATG 624 Query 6232 TTGGTCGATCTTAAAGGTATGTTGGCGAATGGGTTTATGATGGGTAACGCAGACATCGAA 6291 || ||||| | ||||| ||| || | || || || | |||||||| || || |||||| Sbjct 625 CTGATCGATTTGAAAGGCATGCTGACCAACGGCTTCAAAATGGGTAATGCCGAGATCGAA 684 Query 6292 ACCCCTAAGTCAATCTCAACTGCGTGTGCTATCACTGCACAAATTATCGCTCAGGTTGCG 6351 | || ||||| ||||| || ||| || |||| ||||| || ||||| ||||| || Sbjct 685 CCACCGAAGTCGATCTCCACCGCGACCGCCGTCACCGCACAGATCATCGCACAGGTCGCC 744 Query 6352 TGCCA 6356 |||| Sbjct 745 AGCCA 749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 342910681302359