Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq14858 91.5 3e-13 >seq14858 Length=1827956 Score = 91.5 bits (100), Expect = 3e-13 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || || | ||| || || || || || | ||| | ||| || ||| || || || Sbjct 1580286 ATTCCTCCGCGAAGACGCAAGACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCA 1580227 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || ||| |||| ||||| || || ||||||||||| | | ||| || ||||| Sbjct 1580226 GACAGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGG 1580167 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || || || || || || ||||| || || ||||||| || Sbjct 1580166 GGAATACCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCA 1580107 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || || || || ||||| || || || | || || | || ||||||||||| Sbjct 1580106 ACATCAAGCGTGATGGTCTTTCCGGTAAGAGTCTTCACAAAGATCTGCATTTT 1580054 Score = 89.7 bits (98), Expect = 9e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | ||| || || || || || | ||| | ||| || ||| || || || || Sbjct 1581665 ACCACCACGAAGACGCAAGACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGA 1581606 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 | || ||| |||| ||||| || || ||||||||||| | | ||| || ||||| || Sbjct 1581605 CAGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGG 1581546 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || ||||| || || || || || || ||||| || || ||||||| || || Sbjct 1581545 AATACCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCAAC 1581486 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || || || || || || || | || || | || ||||||||| Sbjct 1581485 ATCAAGCGTGATAGTCTTTCCGGTAAGAGTCTTCACAAAGATCTGCATT 1581437 Score = 87.8 bits (96), Expect = 3e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || || | ||| || || || || || | ||| | ||| || ||| || || || Sbjct 1580915 ATTCCTCCGCGAAGACGCAAGACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCA 1580856 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || ||| |||| ||||| || || ||||||||||| | | ||| || ||||| Sbjct 1580855 GACAGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGG 1580796 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || || || || || || ||||| || || ||||||| || Sbjct 1580795 GGAATACCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCA 1580736 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || || || ||||| || || || | || || | || ||||||||| Sbjct 1580735 ACATCAAGCGTGATGGTCTTTCCGGTAAGAGTCTTCACAAAGATCTGCATT 1580685 Score = 86.0 bits (94), Expect = 1e-11 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 171851 AAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCG 171910 ||| || || || || || | ||| | ||| || ||| || || || || | || ||| Sbjct 1581132 AAGACGCAAGACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGACAGAGTTCG 1581073 Query 171911 TTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTC 171970 |||| ||||| || || ||||||||||| | | ||| || ||||| || || ||||| Sbjct 1581072 GCCGTCTTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTC 1581013 Query 171971 TTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGT 172030 || || || || || || ||||| || || ||||||| || || || || || Sbjct 1581012 CTTGTCCTGGATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCAACATCAAGCGT 1580953 Query 172031 AATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| || || || | || || | || ||||||||| Sbjct 1580952 GATGGTCTTTCCGGTAAGAGTCTTCACAAAGATCTGCATT 1580913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904967859673800