Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_021304.1 Length=51552 Score E Sequences producing significant alignments: (Bits) Value seq8597 127 7e-25 seq3417 96.9 1e-15 seq3694 86.0 2e-12 >seq8597 Length=531 Score = 127 bits (140), Expect = 7e-25 Identities = 165/227 (73%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 40790 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40849 |||||||| ||||| |||||||| || || || || ||||| ||||| || ||||| | Sbjct 166 GAAGTCGACGTCGAAGTCGGGCATCGAAACACGTTCCGGGTTAAGGAAACGTTCGAACAG 225 Query 40850 GAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACC 40909 || | || ||||| || || |||||||| || | |||||||| | |||||| Sbjct 226 CAGGTCAAATTC-AGCGGATCAAGATCGGTGATTTTCAGCGCATAGGCGACTAACGAACC 284 Query 40910 GGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAA 40969 ||| | ||||| || || ||||| ||| ||| || || |||| ||| ||||||| Sbjct 285 GGCACCGGAGCCACGGCCCGGGCCAACCGGCACGTTATTGTCTTTCGACCACTGGATGAA 344 Query 40970 GTCCGCGACGACGAGGAAGTACGACGGGAAGCCCATCTGGATGATCA 41016 ||| |||| |||||||| ||||||||||||||| |||||| Sbjct 345 CTCCATTACGATCAGGAAGTAACCTGGGAAGCCCATCTGGTTGATCA 391 >seq3417 Length=361 Score = 96.9 bits (106), Expect = 1e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 40862 CAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCC 40921 || |||||||||||||||||| || || ||||||||||||| || || | ||||| Sbjct 340 CATCGGGTCGAGGTCGGTGATGGTCAGCACCCAGGCGACCAGCGAGCCCGCACCCGAGCC 281 Query 40922 TCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGAC 40981 || || || |||||| | ||| | | |||||||||| ||||||||||| |||| Sbjct 280 GCGGCCCGGTCCGACCGGAATGCCCTGCGCCTTCGCCCATTTGATGAAGTCCGACACGAT 221 Query 40982 GAGGAAGTACGACGGGAAGCCCATCTGGATGATCATGTCGATCTCGTACTGGAGCTGCTT 41041 || ||||| || | | ||| || |||| | ||||| |||| | ||| |||| Sbjct 220 CAGAAAGTAGCCCGCGTATTTCATGCGGGTGATGACGTCGAGCTCGAAGGCAAGCCGCTT 161 Query 41042 GCCGTGCTCGTAGTCCGT 41059 || || || | ||||| Sbjct 160 GCTGTAATCCTCCTCCGT 143 >seq3694 Length=227 Score = 86.0 bits (94), Expect = 2e-12 Identities = 159/227 (70%), Gaps = 10/227 (4%) Strand=Plus/Minus Query 40653 GGCTTGTCCAGCACGCGGGCTGCGTCCTTCATCGCGTTGCGCGCCTTGATCCGTCCGTAC 40712 ||| | | ||||||||| | |||| || | || |||||||| | | |||| | Sbjct 222 GGCATCTGCAGCACGCGCCCGACGTCGCGCAGCACGCCGCGCGCCTGCAGCGTTCCGAAG 163 Query 40713 GTCGCGATCTGCGC-GACCTTGTCGGCCCCGTACT--TCCGGGTGACGTACTGGATCACC 40769 || ||||||||| ||||| ||| ||||| ||| | |||||| |||||||| Sbjct 162 GTGATGATCTGCGCCGACCTGATCGCGGCCGTAGCGCTCCTGC--ACGTAC-GGATCACC 106 Query 40770 TCGCCACGACG--CCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGG 40827 ||||| || || || | || |||||||||||||| || ||||| || ||||| || | Sbjct 105 TCGCCGCGGCGGTCCTGACA--GAAGTCGATGTCGAAGTCCGGCATCGAGACGCGTTCCG 48 Query 40828 GGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGG 40874 | || ||||| |||||||| | || ||| | | ||| |||||| Sbjct 47 GATTGAGGAAGCGCTCGAACAGCAGACCGAACCGGATCGGATCGAGG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164815709116948