Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_021339.1 Length=51077 Score E Sequences producing significant alignments: (Bits) Value seq3417 91.5 5e-14 seq3694 82.4 2e-11 >seq3417 Length=361 Score = 91.5 bits (100), Expect = 5e-14 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 40322 CAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCC 40381 || |||||||||||||||||| || || ||||||||||||| || || | ||||| Sbjct 340 CATCGGGTCGAGGTCGGTGATGGTCAGCACCCAGGCGACCAGCGAGCCCGCACCCGAGCC 281 Query 40382 CCGCCCAGGGCCGACCCAGACCCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGAC 40441 || || || |||||| | || | | |||||||||| ||||||||||| |||| Sbjct 280 GCGGCCCGGTCCGACCGGAATGCCCTGCGCCTTCGCCCATTTGATGAAGTCCGACACGAT 221 Query 40442 GAGGAAGTACGACGGGAACCCCATCTGGATGATCATGTCGATCTCGTACTGGAGCTGCTT 40501 || ||||| || | | ||| || |||| | ||||| |||| | ||| |||| Sbjct 220 CAGAAAGTAGCCCGCGTATTTCATGCGGGTGATGACGTCGAGCTCGAAGGCAAGCCGCTT 161 Query 40502 GCCGTGCTCGTAGTCCGT 40519 || || || | ||||| Sbjct 160 GCTGTAATCCTCCTCCGT 143 >seq3694 Length=227 Score = 82.4 bits (90), Expect = 2e-11 Identities = 153/218 (70%), Gaps = 10/218 (5%) Strand=Plus/Minus Query 40122 AGCACGCGAGCCGCGTCCTTCATCGCGTTGCGCGCCTTGATCCGTCCGTACGTCGCGATC 40181 |||||||| | |||| || | || |||||||| | | |||| | || |||| Sbjct 213 AGCACGCGCCCGACGTCGCGCAGCACGCCGCGCGCCTGCAGCGTTCCGAAGGTGATGATC 154 Query 40182 TGCGC-GACCTTGTCGGCCCCGTACT--TCCGGGTGACGTACTGGATGACCTCGCCACGA 40238 ||||| ||||| ||| ||||| ||| | |||||| |||| |||||||| || Sbjct 153 TGCGCCGACCTGATCGCGGCCGTAGCGCTCCTGC--ACGTAC-GGATCACCTCGCCGCGG 97 Query 40239 CG--CCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGA 40296 || || | || |||||||||||||| || ||||| || ||||| || || || |||| Sbjct 96 CGGTCCTGACA--GAAGTCGATGTCGAAGTCCGGCATCGAGACGCGTTCCGGATTGAGGA 39 Query 40297 AGCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGG 40334 |||||||||| | || ||| | | ||| |||||| Sbjct 38 AGCGCTCGAACAGCAGACCGAACCGGATCGGATCGAGG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163295977357998