Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_021344.2 Length=176227 Score E Sequences producing significant alignments: (Bits) Value seq4204 127 2e-24 seq2293 109 6e-19 >seq4204 Length=800 Score = 127 bits (140), Expect = 2e-24 Identities = 220/312 (71%), Gaps = 11/312 (4%) Strand=Plus/Plus Query 152271 AACGAGAACGCGAACAAAGAT-GCAAGGGTATTCCCGACACAGCGCGATTTGCTGGCGGG 152329 ||||| || || || ||||| |||||| || ||| || |||||||| ||||||| || Sbjct 438 AACGAAAATGCCAATAAAGACAGCAAGGTGATCCCC-ACCCAGCGCGACCTGCTGGCCGG 496 Query 152330 TATCGTAGCGAAGCATTTCGCCCGTAATCATATCCTCCCGAAACATATCGTAGAA---GC 152386 ||||| || ||||||| |||| | |||||||| || || | ||| | || Sbjct 497 GATCGTCGCCAAGCATTACGCCAAACAGCATATCCTGCC---ACGTGACGTGGTGCTGGC 553 Query 152387 GCATGATTC-CGGTGACATCCACTATCACGATCTGGACTA-TAGCCCGTTCACCCCTTAC 152444 || || | ||| || |||||||| |||||||| || || | |||| ||| |||| Sbjct 554 CCACGAAGCGCGGCGAGATCCACTACCACGATCTCGATTACTCGCCC-TTCTTCCCTATG 612 Query 152445 ACTAACTGCTGTCTGGTTGACCTGAAAGGTATGCTGGAGAACGGTTTTAAAATGGGTAAC 152504 |||||| ||| | || ||||||| |||||| ||||| || ||||||||||| Sbjct 613 TTCAACTGCATGCTGATCGATTTGAAAGGCATGCTGACCAACGGCTTCAAAATGGGTAAT 672 Query 152505 GCGGACATTGAACCGCCTAAATCGATCGGTGTTGCTACCGCTCTCATGGCGCAGATCACC 152564 || || || ||||| || || |||||| || ||||| ||| || ||||||| | Sbjct 673 GCCGAGATCGAACCACCGAAGTCGATCTCCACCGCGACCGCCGTCACCGCACAGATCATC 732 Query 152565 GCACAGATTGCC 152576 |||||| | ||| Sbjct 733 GCACAGGTCGCC 744 >seq2293 Length=1342 Score = 109 bits (120), Expect = 6e-19 Identities = 229/340 (67%), Gaps = 20/340 (6%) Strand=Plus/Plus Query 43367 CCGATGTTCTTCGGTGAGGATACGGGG---GTTGCCCGATATGAAGAACAAAAACACAGT 43423 |||||||| |||||| || ||| ||||| || | || | |||||||| Sbjct 706 CCGATGTTTTTCGGTCAGT---CGGTTAACGTTGCGCGTTTCGATCAGCAAAAACATGAA 762 Query 43424 GTATTTGAAAAGCTGACTGAAAAACAACTGTCATTCTTCTGGCGACCGGAAGAAGTGGAT 43483 | || ||||| |||| ||| ||||| ||||| ||||||||||| || |||||||| || Sbjct 763 ATTTTCGAAAAACTGATTGAGAAACAGCTGTCTTTCTTCTGGCGTCCTGAAGAAGTTGAC 822 Query 43484 CTGTCGATTGACCGTATGCAGTATGCGAAAATGCCGGAACATGAAAAAATCATTTTCGAT 43543 | || |||||||| | ||| | | ||||||| ||||| ||| ||||||| Sbjct 823 GTCTCCCGCGACCGTATTGACTATCAGGCACTGCCGGATCATGAGAAACACATTTTCATC 882 Query 43544 TCTAACCTGCAATATCAAACCCTACTGGATACCATTCAGGGACGCGGCCCTAACCTTGCA 43603 || ||| |||| || || || ||||| | |||||||| ||| |||| ||| | || Sbjct 883 AGCAATCTGAAATACCAGACGCTGTTGGATTCGATTCAGGGCCGCAGCCCGAACGTGGCC 942 Query 43604 TTTCTCCCGATTGCCTCTGATGT--ATC-----AATGGAAACGTGGATCGAAACATGGGC 43656 || ||||| ||||| | ||| | ||||||| ||| | ||||| ||| | Sbjct 943 TT-------GTTGCCGCTGATCTCAATCCCGGAACTGGAAACCTGGGTGGAAACCTGGTC 995 Query 43657 GTTCAGTGAAACAATTCACAGTCGCAGTTATACGCACATT 43696 ||| || || || ||| || |||||| || ||| Sbjct 996 ATTCTCCGAGACCATCCACTCCCGTTCTTATACCCATATT 1035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563693667399720