Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_021529.2 Length=247511 Score E Sequences producing significant alignments: (Bits) Value seq5078 98.7 2e-15 >seq5078 Length=902 Score = 98.7 bits (108), Expect = 2e-15 Identities = 157/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 173335 GACAAAGACTACTATACAAACTCGTTCCACTTAGACGTATTCAAGAAAGTGAATCCGTTC 173394 ||||| | ||| || || ||| ||||| | |||||| || || || ||||||| | Sbjct 3 GACAAGGGCTATTACACCAACAGCTTCCATCTGGACGTAGAGAAAAAGGTCAATCCGTAC 62 Query 173395 GAGAAGATTGACTTTGAAGCATCGTACCCAGCATATGCAAACGGCGGTTTCATTTGCTAT 173454 || ||| | || |||||||| | ||||| ||| || || || || ||||| || || Sbjct 63 GACAAGCTGGATTTTGAAGCGCCTTACCCGCCATTGGCCAATGGGGGGTTCATCTGTTAC 122 Query 173455 GCAGAGTTCCCGAACATGCGCGACAATATCAAAGGTCTAGAACGTGTATGGGATTA-TGC 173513 | || | ||||||| ||| |||| | |||| || ||| |||||||||||| || Sbjct 123 GGCGAATACCCGAACCTGCAACACAACCTGAAAGCACTGGAAGATGTATGGGATTACAGC 182 Query 173514 TCATAGCAAAGTTGCTTACTTCGGTACAAACACACCGATTGAT 173556 | | ||| || |||| | |||||| ||||| ||||| ||| Sbjct 183 T-ACAGCCGCGTGCCTTATTACGGTACCAACACGCCGATCGAT 224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 791760093338760