Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_021531.1 Length=223989 Score E Sequences producing significant alignments: (Bits) Value seq6576 221 2e-52 seq1309 105 1e-17 >seq6576 Length=1118 Score = 221 bits (244), Expect = 2e-52 Identities = 406/590 (69%), Gaps = 4/590 (1%) Strand=Plus/Minus Query 87519 CATTACATGCTCGCACTGGAAACGAAAAATCTTATCTTCGCCACCGGCGAAGCGGGGTGT 87578 |||||| | | || | || | |||| | | || || |||||||| ||||| || || Sbjct 1010 CATTACTTAATAGCCATAGATAAGAAACAGTTGATTTTTGCCACCGGTGAAGCCGGCTGC 951 Query 87579 GGGAAAACGTTTATTTCCGCCGCATACGCTTGCGAACGTTTGCTGGCCAAAGATATCGAA 87638 || ||||| ||||| ||| || | || ||| | | ||||| | || Sbjct 950 GGCAAAACATTTATCAGCGCTGCGAAAGCGGCAGAAGCCCTTATACATAAAGAAGTGGAT 891 Query 87639 CGTATCATCGTCACTCGTCCGGTGCTCTCCGCAGATGAAGATTTAGGCTTCCTGCCCGGC 87698 || || || || ||||||||||| | || |||||||| | || ||| | ||||| Sbjct 890 CGGATTATTGTTACTCGTCCGGTTTTGCAGGCGGATGAAGACCTCGGTTTCTTACCCGGG 831 Query 87699 GACGTTGCCGAAAAATTCGCCCCGTACTTCCGCCCTGTTTATGACGTTCTTCAAAAACGT 87758 ||| || | || || |||||||| || ||||| || || |||||| |||| ||| Sbjct 830 GACATTTCTGAGAAGTTCGCCCCTTATTTCCGTCCGGTGTATGACATTCTGGTGCGCCGT 771 Query 87759 CTCGG-TAGCCGCTACCTGCAATACTGCCTTAAGCCCGGTATCGACAAAGTGGAGATTGC 87817 | || | | | || ||||||||||||| || | |||| ||| || ||||| || Sbjct 770 TTAGGATCGTC-CTTTATGCAATACTGCCTGCGTCCGGAAATCGGCAAGGTAGAGATCGC 712 Query 87818 TCCTTTTGCGTACATGCGTGGCCGCAGTTTCGAAAATGCGGTTGTCATTTTAGATGAAGC 87877 ||||| || |||||||| || || | |||||||||||||| || || | |||||||| Sbjct 711 GCCTTTCGCCTACATGCGCGGGCGTACCTTCGAAAATGCGGTAGTTATCCTGGATGAAGC 652 Query 87878 TCAGAACACTACTGCTCAGC-AGATGAAGCTCTTCCTGACACGTATCGGGGAGAACTGTA 87936 |||||| ||| || |||| | |||||| | |||||||| ||| | || |||||| | Sbjct 651 CCAGAACGTTACCGC-CAGCCAAATGAAGATGTTCCTGACCCGTTTGGGTGAGAACGTCA 593 Query 87937 TCGTTATCGTAAACGGTGACGTCACACAGTGCGACTTGCCCAAAGGGGTGAAGTCTGGAC 87996 || ||||| || |||||| | || |||||||||||||| || |||||||| || | Sbjct 592 CGGTAATCGTCAATGGTGACATAACCCAGTGCGACTTGCCGCGCGGCGTGAAGTCCGGCC 533 Query 87997 TGGCCGACGCGTTGACCCGTTTCGAGGAAGACGATTTAGTTGGCGTCGTTCGTTTTACGA 88056 | ||||||| || || ||||| || || || | ||||| || | || ||| | Sbjct 532 TCAGCGACGCGATGGAGCGCTTCGAAGAGGATGAAATGATTGGCATCATCCGCTTTGATA 473 Query 88057 AAGACGACTGTGTGCGCTCTTTGCTTTGTCAGCGTGCGTTGAAAGCGTAC 88106 || | ||||| || ||||| || || ||||| || | || || ||| Sbjct 472 AACAAGACTGCGTCCGCTCCGCCCTGTGCCAGCGCACGCTCAACGCCTAC 423 >seq1309 Length=710 Score = 105 bits (116), Expect = 1e-17 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 99783 CCGCGTGCGTTGCCTAAGCTGATTATCAAACGTAAGCCGGACTCTATCTTCGACTATAAG 99842 ||||| ||||||||||||||| | |||||||| || |||| || | ||||| || Sbjct 621 CCGCGCGCGTTGCCTAAGCTGGTGATCAAACGCAAACCGGCATCGCTGTTCGATTACCGT 562 Query 99843 TTCGAAGATTTTGATATCGAAGGCTACGACCCACACCCGGCTATTAAAGCACCGGTGGCG 99902 ||||| |||||||| |||||||| ||||| || ||||| || || || |||||||| || Sbjct 561 TTCGAGGATTTTGAAATCGAAGGTTACGATCCGCACCCAGCCATCAAGGCACCGGTTGCC 502 Query 99903 ATATGA 99908 || ||| Sbjct 501 ATTTGA 496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716503675756440