Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_021560.1 Length=53102 Score E Sequences producing significant alignments: (Bits) Value seq4997 98.7 3e-16 >seq4997 Length=509 Score = 98.7 bits (108), Expect = 3e-16 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 28522 CGCGCTGCCGGCATCAGGATTGGTCACGAGAAGCTTCAGGGTGCCTTCGGAGAAGTGGAA 28581 ||||||||||| ||| ||||||||||| ||| ||| |||| |||| | || Sbjct 316 CGCGCTGCCGGAATCCGGATTGGTCACCGACAGCACCAGCTTGCCCGCGGACAGCGCGAG 257 Query 28582 CTTCATCGCCCGGCCGCGCTCGGTTGAAACCGACGACACACGGTCAACGGCCGAGGCGAT 28641 ||||| ||| |||||||| ||| | |||| | ||| || ||||| || || | ||| Sbjct 256 CTTCACCGCGCGGCCGCGTTCGCTGGAAATGGTCGAGACGCGGTCGACCGCGGCCTCGAA 197 Query 28642 TGCTTTGGCGTCCGCCGTCACGTCGGTGGCATTGTTGGCTGGGATGACCCGGACGTAGTC 28701 | || ||| || || || || | ||||| || ||||| ||| |||| || Sbjct 196 ATCCTTCTTGTCGACCACCAGTTCCTTGTCGTTGTTCTGCGGAATGACGCGGCCGTAATC 137 Query 28702 CGGGAACGTGCCGTCGATCAGTTTCGA 28728 |||||| |||||||||||||| ||||| Sbjct 136 CGGGAAGGTGCCGTCGATCAGCTTCGA 110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 169774833804048