Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_021772.1 Length=72394 Score E Sequences producing significant alignments: (Bits) Value seq9838 104 1e-17 >seq9838 Length=883 Score = 104 bits (114), Expect = 1e-17 Identities = 214/316 (68%), Gaps = 2/316 (1%) Strand=Plus/Plus Query 12395 GAATTGAAACCAGGTGAAACCAAGTTAATTGAAACTGGTTTGGCTATTCATCTGGACGAT 12454 ||| || ||| |||||||||| ||| | || ||||||||||| || | | ||| Sbjct 396 GAACTGGCACCGGGTGAAACCACGTTGTTACCTACCGGTTTGGCTATCCACATCGCCGAC 455 Query 12455 GTACATGTAGCTGCAATGATTCTTCCTCGTTCAGGTCTAGGCCATAAACATGGTGTAGTG 12514 | | ||||| |||| || || ||||||||| |||| ||||| || ||||| || Sbjct 456 ACGAGTCTGGCTGCGGTGATCCTGCCGCGTTCAGGTTTAGGTCATAAGCACGGTGTGGTA 515 Query 12515 CTTGGGAACCTTACTGGTCTGATTGATTCAGATTATCAGGGTGAACTTATGGTAAGCCTC 12574 || || || || || ||||| || || ||||| ||||| |||| ||||| | || Sbjct 516 CTGGGCAATCTGGTCGGCCTGATCGACTCTGATTACCAGGGCCAACTGATGGTTTCCGTC 575 Query 12575 TGGAATCGCTCTACAG-AGCCTTTTACTGTTAACCCTGGTGACCGTATTGCTCAGATGGT 12633 ||||| || | ||| | | || || || | || ||||| || || || |||||||| Sbjct 576 TGGAACCG-TGGCCAGAAATCCTTCACGATTGAACCCGGTGAACGCATCGCACAGATGGT 634 Query 12634 AATCGTGCCTGTAATGCAGCCTGAGTTCGTTGTAGTGGATTCATTTGAATCTACTGAACG 12693 | |||||||| | || | || ||| | | || || || || | ||| || Sbjct 635 GTTTGTGCCTGTTGTACAAGCCGAATTCAATCTGGTTGAAGAGTTCGACAGCAGTGAGCG 694 Query 12694 TGGTGCTGGTGGCTTT 12709 ||||| ||||||||| Sbjct 695 TGGTGAAGGTGGCTTT 710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 231494064561455