Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_021782.1 Length=72098 Score E Sequences producing significant alignments: (Bits) Value seq9838 91.5 7e-14 >seq9838 Length=883 Score = 91.5 bits (100), Expect = 7e-14 Identities = 175/253 (69%), Gaps = 4/253 (2%) Strand=Plus/Plus Query 7954 GAATTGAAACCAGGTGAAACCAAGTTAGTTGAAACTGGTTTGGCTATTCATCTGGATGAT 8013 ||| || ||| |||||||||| ||| | || ||||||||||| || | | || Sbjct 396 GAACTGGCACCGGGTGAAACCACGTTGTTACCTACCGGTTTGGCTATCCACATCGCCGAC 455 Query 8014 GTGAAGTAT-GCAGCAATGATTCTTCCTCGTTCAGGTCTGGGCCATAAGCATGGTGTAGT 8072 | ||| | || || |||| || || ||||||||| | || |||||||| ||||| || Sbjct 456 ACG-AGTCTGGCTGCGGTGATCCTGCCGCGTTCAGGTTTAGGTCATAAGCACGGTGTGGT 514 Query 8073 GCTTGGGAACCTTACTGGTCTGATTGATTCAGACTATCAGGGTGAACTTATGGTAAGCCT 8132 || || || || || ||||| || || || || ||||| |||| ||||| | | Sbjct 515 ACTGGGCAATCTGGTCGGCCTGATCGACTCTGATTACCAGGGCCAACTGATGGTTTCCGT 574 Query 8133 CTGGAATCGCTCTACAG-AGCCTTTTACTGTTAACCCTGGTGACCGTATTGCTCAGATGG 8191 |||||| || | ||| | | || || || | || ||||| || || || ||||||| Sbjct 575 CTGGAACCG-TGGCCAGAAATCCTTCACGATTGAACCCGGTGAACGCATCGCACAGATGG 633 Query 8192 TAATCGTGCCTGT 8204 | | |||||||| Sbjct 634 TGTTTGTGCCTGT 646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230547036116839