Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq21 102 1e-15 seq9797 98.7 1e-14 >seq21 Length=852027 Score = 102 bits (112), Expect = 1e-15 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 1628465 TCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGA 1628524 |||| || || | ||||||||||| || || |||||||||||||||||||||||||| Sbjct 417289 TCCAGAGGGCACAGAAGAGGTCGCGAGCACGTCGCTCCTCCTTGCCGTGGTTCTTTTTGA 417230 Query 1628525 GGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCT 1628584 |||||| | |||| | || |||||| ||||||| ||| ||| | | ||| | Sbjct 417229 TGTCGAGGAAATCGAAGACATCAAAGTGCCATGGCTCCAAGTAAATGGCGAGGCTGCCTT 417170 Query 1628585 TGCGCTTGCCGCCGCC 1628600 |||| ||||||||||| Sbjct 417169 TGCGTTTGCCGCCGCC 417154 >seq9797 Length=509 Score = 98.7 bits (108), Expect = 1e-14 Identities = 90/111 (81%), Gaps = 2/111 (2%) Strand=Plus/Minus Query 1632239 GACGTGGCCGTCGTCATCCTCGGCCAGGACCCCTA-CATCCACGAGCGCCAGGCGCATGG 1632297 ||||| ||||||||||||||||||||| ||||| ||| |||| |||||||||| || Sbjct 192 GACGTCCGCGTCGTCATCCTCGGCCAGGATCCCTATCAT-GGCGAGGGCCAGGCGCACGG 134 Query 1632298 CATGTCCTTTTCGGTGCAGCCGGGCACGCCCACGCCGCCCAGTTTGGTCAA 1632348 ||| ||| ||||||| ||||||| || ||| |||||||| ||||||| Sbjct 133 GCTGTGCTTCTCGGTGCGGCCGGGCGTGCGCACCCCGCCCAGCCTGGTCAA 83 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6105919636745937