Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq14564 156 4e-33 seq14858 140 3e-28 >seq14564 Length=527 Score = 156 bits (172), Expect = 4e-33 Identities = 184/249 (74%), Gaps = 0/249 (0%) Strand=Plus/Minus Query 56919 CCAAGCGGACACTCCTTTTTGTGGTTTCTGTAGTGCGGCCCACGGATCGTGTATGGACAC 56978 ||| |||| || || ||||| |||||| | ||||| |||||||||| || ||||| Sbjct 527 CCAGGCGGTAACGCCCTTTTGGCCTTTCTGCAACGCGGCAAACGGATCGTGGATTGACAC 468 Query 56979 CTTGAAATCAGCACGATTCGAACACGAGCGTTGCAACGCTTCGAAACTACCCGTGATCGT 57038 || || || |||| | || || || |||||||| | ||| ||||| |||| Sbjct 467 TTTAAAGTCCTCACGGCCCTGGCAGGAACGCTGCAACGCCTGGAAGCTACCTTCGATCTC 408 Query 57039 TTTGAGACTATCGTTGATGCCGTCGCCGCCACAGATCGGTATGAAACCGTATAAGAGATG 57098 ||| ||||| ||||||||||| || |||||||||||||| || || ||||| | | ||| Sbjct 407 TTTCAGACTGTCGTTGATGCCATCACCGCCACAGATCGGGATAAACCCGTACAGCAAATG 348 Query 57099 CGACAGATTGGGCACTGGCACCTTGTCGGCTGCAAAATTCCTACCGTATACGCCCCATTC 57158 || ||| || || | |||| ||| ||| | | ||||| | ||||||||||||||||| Sbjct 347 CGTCAGGTTTTGCGCCGGCAGCTTATCGACGGTGAAATTACGGCCGTATACGCCCCATTC 288 Query 57159 GACGAAATA 57167 || ||||| Sbjct 287 CACAAAATA 279 >seq14858 Length=1827956 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || ||||| || || || ||||| || || || | | Sbjct 1580057 ATGCAGATCTTTGTGAAGACTCTTACCGGAAAGACCATCACGCTTGATGTTGAGCCGTCA 1580116 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||||||| ||||| ||||| || || || ||||| Sbjct 1580117 GACACCATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGTATTCCCCCTGATCAG 1580176 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| |||| ||||| || || ||| ||||||| ||| |||| || || ||| Sbjct 1580177 CAGCGTCTGATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGAACTCTGTCTGACTACAAC 1580236 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||| ||||| || |||||||| ||||| | |||||||| Sbjct 1580237 ATTCAGAAGGAGTCGACTCTCCACTTGGTCTTGCGTCTTCGCGGAGG 1580283 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || ||||| || || || ||||| || || || | | Sbjct 1580686 ATGCAGATCTTTGTGAAGACTCTTACCGGAAAGACCATCACGCTTGATGTTGAGCCGTCA 1580745 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||||||| ||||| ||||| || || || ||||| Sbjct 1580746 GACACCATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGTATTCCCCCTGATCAG 1580805 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| |||| ||||| || || ||| ||||||| ||| |||| || || ||| Sbjct 1580806 CAGCGTCTGATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGAACTCTGTCTGACTACAAC 1580865 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||| ||||| || |||||||| ||||| | |||||||| Sbjct 1580866 ATTCAGAAGGAGTCGACTCTCCACTTGGTCTTGCGTCTTCGCGGAGG 1580912 Score = 136 bits (150), Expect = 4e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || ||||| || ||||| ||||| || || || | | Sbjct 1581438 ATGCAGATCTTTGTGAAGACTCTTACCGGAAAGACTATCACGCTTGATGTTGAGCCGTCA 1581497 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||||||| ||||| ||||| || || || ||||| Sbjct 1581498 GACACCATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGTATTCCCCCTGATCAG 1581557 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| |||| ||||| || || ||| ||||||| ||| |||| || || ||| Sbjct 1581558 CAGCGTCTGATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGAACTCTGTCTGACTACAAC 1581617 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||||| ||||| ||||| || |||||||| ||||| Sbjct 1581618 ATTCAGAAGGAGTCGACTCTCCACTTGGTCTTGCG 1581652 Score = 129 bits (142), Expect = 5e-25 Identities = 165/226 (73%), Gaps = 1/226 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || ||||| || || || ||||| || || || | | Sbjct 1580914 ATGCAGATCTTTGTGAAGACTCTTACCGGAAAGACCATCACGCTTGATGTTGAGCCGTCA 1580973 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||||||| ||||| ||||| || || || ||||| Sbjct 1580974 GACACCATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGTATTCCCCCTGATCAG 1581033 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| |||| ||||| || || ||| |||| || ||| |||| || || ||| Sbjct 1581034 CAGCGTCTGATTTTTGCTGGCAAGCAGTTGGAAGACGGCCGAACTCTGTCTGACTACAAC 1581093 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG-ATTGCGCGGA 24928 ||||| ||||| ||||| || |||||||| ||||| || |||||| Sbjct 1581094 ATTCAGAAGGAGTCGACTCTCCACTTGGTCTTGCGTCTTTCGCGGA 1581139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449814025897080