Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq14564 125 6e-24 >seq14564 Length=527 Score = 125 bits (138), Expect = 6e-24 Identities = 171/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 28812 TATTTTGTGGAATGGAGCGTGTACGGCCGCAACTTTTCGGTGGACAAGGTGCCGCTGCCC 28871 ||||||||||||||| |||| |||||||| || || | || || ||| ||||| || Sbjct 279 TATTTTGTGGAATGGGGCGTATACGGCCGTAATTTCACCGTCGATAAGCTGCCGGCGCAA 338 Query 28872 AACCTCTCGCATCTGTTATACGGCTTCGTACCTATTTGCGGCGGCGACGGGCTCAACGAC 28931 ||||| ||||| || | ||||| || | || || || ||||| || || |||||||| Sbjct 339 AACCTGACGCATTTGCTGTACGGGTTTATCCCGATCTGTGGCGGTGATGGCATCAACGAC 398 Query 28932 GCCCTTAAAACCATACCCGGTAGTTTTGAAGCGCTGCAACGTTCGTGCAACGGCCGTTCA 28991 || ||| || ||||| || | ||| |||| ||||| ||| | |||||| Sbjct 399 AGTCTGAAAGAGATCGAAGGTAGCTTCCAGGCGTTGCAGCGTTCCTGCCAGGGCCGTGAG 458 Query 28992 GATTTTAAAGTTGCTATTCACGATCCTTGGGCCGCAATACAAAAACCGCAAAAGGGCGT 29050 || |||||||| | || |||||||| | ||||| | || ||| ||||||||||| Sbjct 459 GACTTTAAAGTGTCAATCCACGATCCGTTTGCCGCGTTGCAGAAAGGCCAAAAGGGCGT 517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412766826774473