Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq41 138 2e-26 seq9 107 3e-17 seq9797 105 1e-16 seq21 96.9 5e-14 seq57 95.1 2e-13 seq1 91.5 2e-12 >seq41 Length=347658 Score = 138 bits (152), Expect = 2e-26 Identities = 176/240 (73%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| |||| ||||||||| | | Sbjct 49909 TGTACTTGGTGACGGCCTTGGTGCCCTCAGAGACGGCGTGCTTGGCAAGTTCGCCGGGTA 49968 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || || ||||| ||||||||||| |||| | | || | |||||| || | Sbjct 49969 GGACAAGACGGACGGCAGTCTGGATCTCTCGGGAGGACAGAGTATCCTTCTTGTT-GTAC 50027 Query 1485590 GCGC-CAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 || || ||| ||||| ||| | || ||||| | ||| || || || || Sbjct 50028 TTGCAGAGCTTGCCAGCCTCAGTGGCAATTTTGTCGAAGGTATCGGCGATGAAAGAAGTC 50087 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 |||||| |||||| || ||| ||| || ||||||||||||||||| | ||||||| Sbjct 50088 ATGATCATCATCGACTTCTTGCTGATCCCAGTCTCGGGGTGCACCTGCTTCAACACCTTG 50147 >seq9 Length=1865977 Score = 107 bits (118), Expect = 3e-17 Identities = 171/243 (70%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 1485467 CGTTGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGC 1485526 || |||||||||||||||||||||| ||||| || || |||||| | || ||||| ||| Sbjct 838564 CGGTGTACTTGGTGACGGCCTTGGTGCCCTCAGACACCGCGTGCTTTGCGAGTTCTCCGG 838505 Query 1485527 GCATGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAG 1485586 | | | || || |||||||| ||||| || |||| | | |||| |||||| | Sbjct 838504 GGAGAACCAAACGAACGGCGGTTTGGATTTCCCGGGAGGACAGAGTGTCCTTCTTGTT-G 838446 Query 1485587 TGCGCGC-CAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAG 1485645 | | || || ||| ||||| | | |||| ||||| |||| || || || Sbjct 838445 TACTTGCAGAGCTTGCCAGCCTCCGAGGCGATCTTGTCGAAGGTGTCAGCGATGAAGGAA 838386 Query 1485646 TTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACC 1485705 |||||||| ||| || || ||| |||||| || |||||||||||||| | ||| Sbjct 838385 GTCATGATCATCATGGACTTCTTGCTGATGCCGGTTTCAGGGTGCACCTGCTTCAAAACC 838326 Query 1485706 TTG 1485708 ||| Sbjct 838325 TTG 838323 >seq9797 Length=509 Score = 105 bits (116), Expect = 1e-16 Identities = 92/112 (82%), Gaps = 2/112 (2%) Strand=Plus/Minus Query 2075722 GACGTGGCCGTCGTCATCCTCGGCCAGGACCCCTA-CATCCACGAGCGCCAGGCGCACGG 2075780 ||||| ||||||||||||||||||||| ||||| ||| |||| ||||||||||||| Sbjct 192 GACGTCCGCGTCGTCATCCTCGGCCAGGATCCCTATCATGG-CGAGGGCCAGGCGCACGG 134 Query 2075781 AATGTCCTTTTCGGTGCAGCCGGGCACGCCCACGCCGCCCAGTTTGGTCAAC 2075832 ||| ||| ||||||| ||||||| || ||| |||||||| |||||||| Sbjct 133 GCTGTGCTTCTCGGTGCGGCCGGGCGTGCGCACCCCGCCCAGCCTGGTCAAC 82 >seq21 Length=852027 Score = 96.9 bits (106), Expect = 5e-14 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 2071877 TCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTCA 2071936 |||| ||| | | ||||| ||||| || || |||||||||||||||||||||||| | Sbjct 417289 TCCAGAGGGCACAGAAGAGGTCGCGAGCACGTCGCTCCTCCTTGCCGTGGTTCTTTTTGA 417230 Query 2071937 GGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCT 2071996 |||||| | |||| || || |||||| ||||||| ||| ||| | | ||| | Sbjct 417229 TGTCGAGGAAATCGAAGACATCAAAGTGCCATGGCTCCAAGTAAATGGCGAGGCTGCCTT 417170 Query 2071997 TGCGCTTGCCGCCGCC 2072012 |||| ||||||||||| Sbjct 417169 TGCGTTTGCCGCCGCC 417154 Score = 87.8 bits (96), Expect = 3e-11 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 2071574 ACTGGACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTGC 2071633 ||| |||||| || ||||||| |||| | | | || |||| ||||| |||||||| Sbjct 417939 ACTCGACGACTTCTGTGCACAAGTTGCTGCATTTGATAGTTCCCAAGTTCTTCTGGTTGC 417880 Query 2071634 TGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCG 2071693 | || | ||| ||||| |||| ||||||||| |||| ||||||||||| |||||| Sbjct 417879 TCTTCCGATTGCAAGCGTCTTTGTACAGCATGTACGGCGTGCCCGTCTCGATTTGCGCCT 417820 Query 2071694 TGACGATGGCCGACCAAA 2071711 || || || |||||| Sbjct 417819 GGAGAATCGCAAACCAAA 417802 >seq57 Length=138120 Score = 95.1 bits (104), Expect = 2e-13 Identities = 119/161 (74%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| |||||||| |||||||| ||||| |||||| ||||| ||||| || | || Sbjct 24983 TGACCCCCGCCTTCTGGTACTCGCCAACGCGTTTCTCGAAGAAGTTCGTCTTCCCTTGGA 25042 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCAC-CCG 794009 | || |||||||||||||| |||||| || | || | || |||| | || || Sbjct 25043 GAGAAATCAACTCCATCCAGTCGAACGGATTCGTCGCGAAAAAGATCTTC-GGAACTCCC 25101 Query 794010 AGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTG 794050 || || | ||||| || || ||||| |||||||||||||| Sbjct 25102 AGAGAAGTCAGCAGACGATCCGCGACAAATTCAATGTACTG 25142 >seq1 Length=4641914 Score = 91.5 bits (100), Expect = 2e-12 Identities = 194/284 (68%), Gaps = 8/284 (3%) Strand=Plus/Minus Query 429527 CGTCGAGCGCCACCTGCGCACCGGCGACCCCGTGGTCATGAACCGGCAGCCGTCGCTCCA 429586 ||||||||||||| |||| || ||| ||| | | || || ||||||||||| || Sbjct 2395561 CGTCGAGCGCCACATGCGGGATGGGGACTTTGTGCTGTTCAATCGACAGCCGTCGCTTCA 2395502 Query 429587 CATGGGGTCGATGCTCAACCACAAGGTGGTGCCCATGC--CCGGTCGC-ACCTTCCGGCT 429643 || |||||| | |||| ||||| | || | ||| | | |||||||| || Sbjct 2395501 CAAAATGTCGATCATGGGCCACCAGGTGAAG---ATTCTTCCGTACTCGACCTTCCGTCT 2395445 Query 429644 CAACCTGGCCGTGACGGGCACCTACAACGCCGACTTTGACGGCGACGAGATGAACCTGCA 429703 |||||| | || ||| | |||||||||||||| ||||| || || |||||| |||| Sbjct 2395444 CAACCTATCTGTCACGTCTCCGTACAACGCCGACTTCGACGGAGATGAAATGAACTTGCA 2395385 Query 429704 CGTGCCCCAG-TCGGAGATGGCACGCGCCGAAGTCGCCCACACCATGGGCGTGGCCCTCA 429762 | | | ||| || ||| | ||||||||| || ||| ||| || | Sbjct 2395384 CTTAGCGCAGAGCGAAGA-AACGCGCGCCGAAATCAAGCACTTGATGAAGGTTCCGAAAC 2395326 Query 429763 AGGCCGTGTCGCCGCAGGCCAACAAGCCCATCATCGGGCTCGTG 429806 || ||| |||||||||| ||||||||| |||| ||| | ||| Sbjct 2395325 AGATCGTTTCGCCGCAGGGAAACAAGCCCGTCATGGGGATTGTG 2395282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7914665567648979