Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq14858 100 2e-16 seq14857 98.7 6e-16 >seq14858 Length=1827956 Score = 100 bits (110), Expect = 2e-16 Identities = 162/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| | | | || ||||| ||| | || ||||||||||||||| ||||| | Sbjct 1580285 TTCCTCCGCGAAGACGCAAGACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAG 1580226 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | || | || | || |||| ||||| || || || ||||| || ||||| || | | Sbjct 1580225 ACAGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGG 1580166 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTC 34926 | | || |||||||| | || ||| || || || || || | || | ||| Sbjct 1580165 GAATACCTTCCTTGTCCTGGATCTTTGCCTTCAC--ATTCTCGATGGTGTCTGACGGCTC 1580108 Query 34927 GACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||||| || ||||||||||| || || ||||| |||||||||||||| Sbjct 1580107 AACATCAAGCGTGATGGTCTTTCCGGTAAGAGTCTTCACAAAGATCTGCAT 1580057 Score = 100 bits (110), Expect = 2e-16 Identities = 162/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| | | | || ||||| ||| | || ||||||||||||||| ||||| | Sbjct 1580914 TTCCTCCGCGAAGACGCAAGACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAG 1580855 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | || | || | || |||| ||||| || || || ||||| || ||||| || | | Sbjct 1580854 ACAGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGG 1580795 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTC 34926 | | || |||||||| | || ||| || || || || || | || | ||| Sbjct 1580794 GAATACCTTCCTTGTCCTGGATCTTTGCCTTCAC--ATTCTCGATGGTGTCTGACGGCTC 1580737 Query 34927 GACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||||| || ||||||||||| || || ||||| |||||||||||||| Sbjct 1580736 AACATCAAGCGTGATGGTCTTTCCGGTAAGAGTCTTCACAAAGATCTGCAT 1580686 Score = 98.7 bits (108), Expect = 6e-16 Identities = 152/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || ||||| ||| | || ||||||||||||||| ||||| || || | || | || Sbjct 1581126 CAAGACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGACAGAGTTCGGCCGTC 1581067 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 |||| ||||| || || || ||||| || ||||| || | || | || |||||||| Sbjct 1581066 TTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTC 1581007 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | || ||| || || || || || | || | ||| ||||||| || ||| Sbjct 1581006 CTGGATCTTTGCCTTCAC--ATTCTCGATGGTGTCTGACGGCTCAACATCAAGCGTGATG 1580949 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||||| || || ||||| |||||||||||||| Sbjct 1580948 GTCTTTCCGGTAAGAGTCTTCACAAAGATCTGCAT 1580914 Score = 95.1 bits (104), Expect = 8e-15 Identities = 151/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || ||||| ||| | || ||||||||||||||| ||||| || || | || | || Sbjct 1581650 CAAGACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGACAGAGTTCGGCCGTC 1581591 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 |||| ||||| || || || ||||| || ||||| || | || | || |||||||| Sbjct 1581590 CTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTC 1581531 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | || ||| || || || || || | || | ||| ||||||| || || Sbjct 1581530 CTGGATCTTTGCCTTCAC--ATTCTCGATGGTGTCTGACGGCTCAACATCAAGCGTGATA 1581473 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||||| || || ||||| |||||||||||||| Sbjct 1581472 GTCTTTCCGGTAAGAGTCTTCACAAAGATCTGCAT 1581438 >seq14857 Length=2032611 Score = 98.7 bits (108), Expect = 6e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||| ||| | ||| |||||||| ||||| ||||| || ||| | | | || || Sbjct 1173538 ACCAAGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCTGCCGTCCTCG 1173479 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 || ||||| || ||||||||||| || |||||||| |||| | |||||||| || | Sbjct 1173478 AGCTGCTTGCCTGCGAAGATCAGACGCTGCTGGTCAGGCGGAATTCCCTCCTTATCCTGA 1173419 Query 34889 ATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948 || || ||||| | | || | ||| | |||||| || | || || ||||| Sbjct 1173418 ATCTTGGCCTTGACATTTTCGATGGTGTCAGAAGGCTCGACGTCCAAAGTGATCGTCTTG 1173359 Query 34949 CCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || ||||| ||||| || || |||||||| Sbjct 1173358 CCGGTGAGCGTCTTCACGAAAATCTGCAT 1173330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325633811028959