Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_022749.1 Length=39758 Score E Sequences producing significant alignments: (Bits) Value seq10212 96.9 9e-16 seq1583 95.1 3e-15 >seq10212 Length=656 Score = 96.9 bits (106), Expect = 9e-16 Identities = 178/261 (68%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 23731 GCTGCATATCTATTTGTTGCCATTCAAGGTTGATGATGTTCGAGCGTCTTAAGCCTGTTG 23790 |||||||||| ||||| ||| |||| | ||| ||||| ||||| | | ||| || | Sbjct 656 GCTGCATATCGATTTGCGACCAGGCAAGTTCGATAATGTTAGAGCGACGGAGGCCAGTGG 597 Query 23791 CCAGTGCAAATTCAACAACAGACTTTAATGGCTCCGGACATTCATCAATCAGCCTTTGTG 23850 |||||||||||||| ||| || | || || || || ||||| | | | ||||| Sbjct 596 TTAGTGCAAATTCAACGGTAGATTTAAGAGGTTCTGGGCACTCATCTACTAAGCGTTGTG 537 Query 23851 CTTCATGGGGCTCCAGCCAGCGGATCCGTTTATTCTTTGGTTGAGGCACTTTAATAATTG 23910 | | | ||| || ||||| || | || || || || || ||||| || || | || Sbjct 536 CCTGAGCGGGTTCGAGCCACCGAACTCGCTTGTTTCTTTCCTGCGGCACCTTGATCACTG 477 Query 23911 GTGCCTTATCCAGCATTTTCCATTCACGCTCTGCGGCTCTTAGTAGGGCCTTTATAAATG 23970 ||| ||| || | | ||||| || | || || || | | || ||||| || || | Sbjct 476 GTGACTTTTCTATCCACTTCCAATCCCTTTCCGCAGCCCGCATAAGAGCCTTCATCAAAG 417 Query 23971 AAAGATGCGTAGCCTTCGTTG 23991 ||| ||| ||||||| |||| Sbjct 416 CAAGGTGCTTAGCCTTTGTTG 396 >seq1583 Length=584 Score = 95.1 bits (104), Expect = 3e-15 Identities = 119/162 (73%), Gaps = 1/162 (1%) Strand=Plus/Plus Query 34311 GAAAAGTACACGCGTTGGGTTAAGACGCAGCCGTGCGCATGTTGTGGAAAACCTGCTGAT 34370 ||||||| || |||||||||||| | ||||||||||| || ||||| || || | || Sbjct 404 GAAAAGTTTACTCGTTGGGTTAAGTCTCAGCCGTGCGCTTGCTGTGGCAACCCATCCGAC 463 Query 34371 GATCCCCACCACCTGATAGGCCACGGTCAGGGGGGAATGGGTACAAAAGCGCATGACCTC 34430 || || |||||| | || |||||||| || || || |||| || || || ||||| | Sbjct 464 GACCCACACCACATCATCGGCCACGGCCAAGGCGGCATGGCCACCAAGGCACATGA-TTT 522 Query 34431 TTTGTGTTGCCTTTGTGCAGAAAGCATCACGACGAGCTGCAT 34472 ||| | || | ||| | || ||||||||||| ||||| Sbjct 523 TTTACCATCCCACTATGCCGGAAACATCACGACGATTTGCAT 564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127081569401040