Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_022988.1 Length=74210 Score E Sequences producing significant alignments: (Bits) Value seq5757 118 5e-22 >seq5757 Length=557 Score = 118 bits (130), Expect = 5e-22 Identities = 319/482 (66%), Gaps = 11/482 (2%) Strand=Plus/Minus Query 64835 CATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGA 64894 ||| || ||||| || | ||||| || | || || || ||| || || || |||| Sbjct 536 CATTGATGCTGAACATGCGCTGGATCCGGTATATGCGAAAAAGCTGGGCGTTGATATCGA 477 Query 64895 CAACCTCGTGGTGGT-TCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCC 64953 |||||| || || | |||||| || || || ||||| || |||| ||| |||| | Sbjct 476 CAACCTGCTG-TGTTCTCAGCCAGATACGGGTGAGCAAGCATTGGAAATCTGTGACGCCT 418 Query 64954 TCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGC 65013 | | ||||||| | | | || |||||||||| || || || || ||| Sbjct 417 TAACCCGCTCTGGCGCGGTTGATGTGATCATCGTTGACTCCGTAGCAGCGTTGACGCCAA 358 Query 65014 GCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGT 65073 || || |||||||||| ||||| ||| ||| | |||||| || || | ||| Sbjct 357 AAGCAGAAATCGAAGGCGAAATCGGTGACTCACACATGGGCCTGGCGGCACGTATGATGA 298 Query 65074 CGCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGG 65133 ||||| ||||| || || |||| | | | | | ||||||||||| | ||| Sbjct 297 GCCAGGCAATGCGTAAACTGGCCGGTAACCTGAAAAACGCCAACACGCTGCTGATCTTCA 238 Query 65134 TCAACCAGTTGCGCGAGAAGATCGG---CAACGTGGGCTACGGCCCGAATGAGACCACCA 65190 |||||||| | || |||||| || | | ||||| |||| || ||||||| Sbjct 237 TCAACCAGATCCGTATGAAGATTGGTGTGATGTTCGGCTA--ACCCG---GAAACCACCA 183 Query 65191 CGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCA 65250 | || || || || ||| ||||||||||| || || |||| ||||||| || | | Sbjct 182 CCGGTGGTAACGCGCTGAAATTCTACGCCTCTGTTCGTCTGGACATCCGTCGTATTGGCG 123 Query 65251 CCGAGAAGGAA-GGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAAC 65309 | | ||| ||| ||||| | | || || | | ||||| ||||| || || |||||| Sbjct 122 CGGTGAAAGAAGGGCGAAAACGTGGTGGGTAGCGAAACCCGCGTGAAAGTGGTGAAGAAC 63 Query 65310 AA 65311 || Sbjct 62 AA 61 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 237304212045991