Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq14564 134 1e-26 seq14858 89.7 4e-13 >seq14564 Length=527 Score = 134 bits (148), Expect = 1e-26 Identities = 173/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 29076 TATTTTGTAGAATGGGGCGTATATGGCCGCAACTTTCCGGTAGACAAAGTGCCGCTGCCC 29135 |||||||| |||||||||||||| ||||| || || | || || || ||||| || Sbjct 279 TATTTTGTGGAATGGGGCGTATACGGCCGTAATTTCACCGTCGATAAGCTGCCGGCGCAA 338 Query 29136 AACCTCTCGCATCTGTTGTACGGTTTCATACCTATTTGCGGCGGCGACGGGCTCAACGAC 29195 ||||| ||||| || ||||||| || || || || || ||||| || || |||||||| Sbjct 339 AACCTGACGCATTTGCTGTACGGGTTTATCCCGATCTGTGGCGGTGATGGCATCAACGAC 398 Query 29196 GCCCTCAAAACCATTCCCGGCAGTTTTGAGGCGCTGCAACGCTCTTGCAAGGGCCGTTCA 29255 || ||| || || || || ||||| |||| || || ||| |||||||| Sbjct 399 AGTCTGAAAGAGATCGAAGGTAGCTTCCAGGCGTTGCAGCGTTCCTGCCAGGGCCGTGAG 458 Query 29256 GATTTCAAAGTCGCTATTCACGATCCGTGGGCCGCGATACAAAAACCGCAAAAGGGCGT 29314 || || ||||| | || |||||||||| |||||| | || ||| ||||||||||| Sbjct 459 GACTTTAAAGTGTCAATCCACGATCCGTTTGCCGCGTTGCAGAAAGGCCAAAAGGGCGT 517 >seq14858 Length=1827956 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 |||||||| || ||||| || ||| | || || || ||||| || | || ||| | Sbjct 1580054 AAAATGCAGATCTTTGTGAAGACTCTTACCGGAAAGACCATCACGCTTGATGTTGAGCCG 1580113 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 || || ||| | || || |||||| || || ||||| | ||| ||| Sbjct 1580114 TCAGACACCATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGTATTCCCCCTGAT 1580173 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||| | || |||| ||| || || ||| ||||||||| | ||| || | |||||| Sbjct 1580174 CAGCAGCGTCTGATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGAACTCTGTCTGACTAC 1580233 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 |||||||| |||||||| || | ||| |||| ||| | | || || |||| Sbjct 1580234 AACATTCAGAAGGAGTCGACTCTCCACTTGGTCTTGCGTCTTCGCGGAGGAA 1580285 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| || ||||| || ||| | || || || ||||| || | || ||| | Sbjct 1580685 AATGCAGATCTTTGTGAAGACTCTTACCGGAAAGACCATCACGCTTGATGTTGAGCCGTC 1580744 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | || || |||||| || || ||||| | ||| ||||| Sbjct 1580745 AGACACCATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGTATTCCCCCTGATCA 1580804 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || |||| ||| || || ||| ||||||||| | ||| || | |||||||| Sbjct 1580805 GCAGCGTCTGATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGAACTCTGTCTGACTACAA 1580864 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 |||||| |||||||| || | ||| |||| ||| | | || || |||| Sbjct 1580865 CATTCAGAAGGAGTCGACTCTCCACTTGGTCTTGCGTCTTCGCGGAGGAA 1580914 Score = 82.4 bits (90), Expect = 6e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 107649 GATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAG 107708 || || ||||| | ||| ||||||||| | || |||| ||| || || ||| ||||| Sbjct 1581531 GACAAGGAAGGTATTCCCCCTGATCAGCAGCGTCTGATTTTTGCTGGCAAGCAGTTGGAG 1581590 Query 107709 GACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 |||| | ||| || | |||||||||||||| |||||||| || | ||| |||| ||| Sbjct 1581591 GACGGCCGAACTCTGTCTGACTACAACATTCAGAAGGAGTCGACTCTCCACTTGGTCTTG 1581650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398804556057229