Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_023557.1 Length=271084 Score E Sequences producing significant alignments: (Bits) Value seq2293 421 1e-112 seq14546 93.3 7e-14 >seq2293 Length=1342 Score = 421 bits (466), Expect = 1e-112 Identities = 494/662 (75%), Gaps = 8/662 (1%) Strand=Plus/Plus Query 71290 AAAAACGATCAGATGGCTGAACCGATGTTCCTGGGTCAGTCGGTTAACGTCTCACGTTAT 71349 |||||| | ||| | ||||||||||| | ||||||||||||||||| | |||| Sbjct 685 AAAAACAACCAGTTACTGGAACCGATGTTTTTCGGTCAGTCGGTTAACGTTGCGCGTTTC 744 Query 71350 GATCAGCAGAAGTACCCCGCGTTCGAAAAGCTGATTGAGAAACAACTTTCATTCTTCTGG 71409 |||||||| || | |||||||| |||||||||||||| || || ||||||||| Sbjct 745 GATCAGCAAAAACATGAAATTTTCGAAAAACTGATTGAGAAACAGCTGTCTTTCTTCTGG 804 Query 71410 CGACCTGAAGAGGTGGATGTTTCGCAAGACCGTATCGACTTCCAGGGGTTGCCAGATCAT 71469 || |||||||| || || || || | |||||||| |||| |||| |||| |||||| Sbjct 805 CGTCCTGAAGAAGTTGACGTCTCCCGCGACCGTATTGACTATCAGGCACTGCCGGATCAT 864 Query 71470 GAAAAACACATCTTCGTTTCTAACCTGAAATACCAAACCCTGCTGGACTCGATTCAGGGT 71529 || |||||||| ||| | || ||||||||||| || ||| |||| ||||||||||| Sbjct 865 GAGAAACACATTTTCATCAGCAATCTGAAATACCAGACGCTGTTGGATTCGATTCAGGGC 924 Query 71530 CGTAGCCCGAACGTGGCCTTGCTGCCGATCTGTTCT--ATCCCGGAACTCGAAACCTGGA 71587 || |||||||||||||||||| ||||| ||| ||| ||||||||||| ||||||||| Sbjct 925 CGCAGCCCGAACGTGGCCTTGTTGCCG--CTGATCTCAATCCCGGAACTGGAAACCTGGG 982 Query 71588 TTGAAACCTGGGCGTTCTCTGAAACGATTCACTCGCGCTCATACACCCACATCATCCGTA 71647 | ||||||||| | ||||| || || || ||||| || || || ||||| || ||||||| Sbjct 983 TGGAAACCTGGTCATTCTCCGAGACCATCCACTCCCGTTCTTATACCCATATTATCCGTA 1042 Query 71648 ATATCTTTACTGACCCCTCCATCGTGTTTGATGACATCGTGACCAACGAACACATC--AA 71705 ||||| | | || || | ||||| |||||||| ||||| ||||||||| | ||| | Sbjct 1043 ATATCGTCAACGATCCGGCGATCGTATTTGATGATATCGTCACCAACGAAGAGATCCTCA 1102 Query 71706 AGCGCGTGCTGAGTCCGTCACGGAGTATTACGACCAGCTGATCGAAATGACCATGTACCT 71765 |||||| | || | | ||| || |||||| | |||||||| ||||| | ||| Sbjct 1103 AGCGCGCG-AAAGACATTTCCGG-CTACTACGACGATCTGATCGAGATGACAAGCTACTA 1160 Query 71766 CAACTTACTGGGTGAAGGTACTCATGTAATCAATGGTAAGAAAGTCGTGGTCTCGATGCG 71825 | || | ||||||||||| || || |||| ||||| | || || |||| Sbjct 1161 CCACCTGCTGGGTGAAGGCACACACCAGGTCAACGGTAAAACCGTGACCATCAGCCTGCG 1220 Query 71826 TGCTATCAAGCGTCTGGTCTACCTGTGCATCGTGTCGGTCAACGTGTTGGAAGCCATCCG 71885 ||| | || | | | || |||||| | || ||||||| |||||||| ||||| Sbjct 1221 TGCGCTGAAAAAGCAGCTTTATCTGTGCCTGATGAGTGTCAACGCATTGGAAGCGATCCG 1280 Query 71886 CTTCTATGTCTCGTTTGCCTGCTCGTTTGCCTTTGCTGAACGCGAGCTGATGGAAGGCAA 71945 |||||||||| || ||||| || || |||||||| ||||| || |||||||||||||| Sbjct 1281 CTTCTATGTCAGCTTCGCCTGTTCATTCGCCTTTGCGGAACGTGAACTGATGGAAGGCAA 1340 Query 71946 CG 71947 || Sbjct 1341 CG 1342 >seq14546 Length=505 Score = 93.3 bits (102), Expect = 7e-14 Identities = 74/88 (84%), Gaps = 1/88 (1%) Strand=Plus/Minus Query 165194 TCTATAGTTCAGTCGGTAGAACAGCGGACTGTTAATCCGTAGGTCGCTGGTTCGAATCCA 165253 ||| |||||||||||||||||| |||||||||||||||||| ||| ||||||||| |||| Sbjct 260 TCTGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCA 201 Query 165254 GCTAGACCAGCCA-AACAATGACGCCCG 165280 | ||| ||||| | | |||||||| Sbjct 200 GTCAGAGGAGCCATATTAGAGACGCCCG 173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 867179680604640