Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_023610.1 Length=218339 Score E Sequences producing significant alignments: (Bits) Value seq6576 250 3e-61 >seq6576 Length=1118 Score = 250 bits (276), Expect = 3e-61 Identities = 352/487 (72%), Gaps = 18/487 (4%) Strand=Plus/Plus Query 87399 GAAACGCTGTAGCGCGTCGGAAAGTCC--ACTTTGGACCCCTCTCGGTAAATCACACTGA 87456 ||| |||| | ||||||| || || |||| || || | ||| || || ||||| Sbjct 510 GAAGCGCTCCATCGCGTCGCTGAGGCCGGACTTC--ACGCCGCGCGGCAAGTCGCACTGG 567 Query 87457 GCCACGTCTCCGTTAACAATCACGGTCACGTTCTCACCCAGACGTGTCAGGAACATTTTC 87516 | | ||| || || || || || || ||||||||||||| ||| ||||||||||| ||| Sbjct 568 GTTATGTCACCATTGACGATTACCGTGACGTTCTCACCCAAACGGGTCAGGAACATCTTC 627 Query 87517 ATCTG--TGCCTTGGTTACGTTCTGGGCTTCGTCCAGGATAACTACCGCGTTCTCAAACG 87574 || || || | ||| |||||||||||||| ||||||||||||||||| || || || | Sbjct 628 ATTTGGCTGGC--GGTAACGTTCTGGGCTTCATCCAGGATAACTACCGCATTTTCGAAGG 685 Query 87575 TGCGGCCACGCATATACGCGAAGGGAGCAATTTCCACCTTCTTCACATCCGGGCGCAAGC 87634 | || || ||||| || ||||| || || || || ||||| | ||||| |||| || Sbjct 686 TACGCCCGCGCATGTAGGCGAAAGGCGCGATCTCTACCTTGCCGATTTCCGGACGCAGGC 745 Query 87635 AGTACTG---AAGGAACGTACCACCAAGGCGTTTCTCCAGGATGTCTTGAACCGGGCGGA 87691 |||| || || | ||| || | |||| | |||| ||||| | ||||| |||| Sbjct 746 AGTATTGCATAAAGGACGATCCTAAACGGCG---CACCAGAATGTCATACACCGGACGGA 802 Query 87692 AATACGGGGCGAATTTCTCGCTGATGTCCCCAGGCAAGAAGCCCAGGTTCTCACCGGACT 87751 |||| |||||||| ||||| |||||||| || ||||| || |||| ||| | | || Sbjct 803 AATAAGGGGCGAACTTCTCAGAAATGTCCCCGGGTAAGAAACCGAGGTCTTCATCCGCCT 862 Query 87752 CTAAGACAGGACGCGTCACGATGATGCGCTCCACCTCTTTATCCAGCAATGCTTTGGCCG 87811 || || ||||| || || || || || ||||| ||||||| | | |||| |||| Sbjct 863 GCAAAACCGGACGAGTAACAATAATCCGATCCACTTCTTTATGTATAAGGGCTTCTGCCG 922 Query 87812 CGTGCGCA--GTTGACAGGAATGTTTTACCACAACCGGCTTCACCCGTTGCAAAGATTAA 87869 | | |||| | ||| | |||||||| || || ||||||||||| || ||||| || || Sbjct 923 CTTTCGCAGCGCTGATA--AATGTTTTGCCGCAGCCGGCTTCACCGGTGGCAAAAATCAA 980 Query 87870 TTGCTTC 87876 || ||| Sbjct 981 CTGTTTC 987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 698427034342440