Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq2 111 1e-18 seq10923 86.0 5e-11 >seq2 Length=4461408 Score = 111 bits (122), Expect = 1e-18 Identities = 249/368 (68%), Gaps = 6/368 (2%) Strand=Plus/Minus Query 281441 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 281500 ||||| || || || | |||||| |||||||| ||||| ||||| || | | || || Sbjct 3485715 ATACCGTTAGCGTCGATATCAAAAGTGACTTCGATTTGGGGGACACCACGGGGGGCGGGG 3485656 Query 281501 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 281560 ||||| || ||||| | ||| | ||||| || || ||||| || | || ||| Sbjct 3485655 GGGATACCATCCAAGTGGAATTTGCCCAGGAGGTTGTTGTCTTTGGTCATCGCACGCTCA 3485596 Query 281561 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 281620 || ||| | | || || ||| | | || || || | || ||||| || |||| Sbjct 3485595 CCTTCGTACACCTGAATCAGCACTCCTGGCTGGTTGTCCGCGTACGTTGTGAAGG-TCTG 3485537 Query 281621 -GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGC 281679 || || ||| || || ||||||||||| ||||| | |||||||| | ||||||||| Sbjct 3485536 AGACTTCTTAGTCGGGATCGTTGTGTTTCTCTCAATCAGCTTGGTCATGACACCACCAGC 3485477 Query 281680 TGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTC 281739 ||| || | ||| ||||| || || | ||||| | || | | || || | || Sbjct 3485476 TGTCTCCAGACCGAGAGAGAGGGGCGCAACATCCAGAAGAAGCAAATCCTGCA-CTTGGG 3485418 Query 281740 ATCAGTT--TGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 281797 | | | | || |||| || ||||| || | ||||||||| || ||||| || ||| Sbjct 3485417 AGCTGGTAACTCCCTTCAAG-ATCGCTGCCTGGACAGCAGCACCGTACGCAACGGCCTCA 3485359 Query 281798 TCAGGATT 281805 ||||| || Sbjct 3485358 TCAGGGTT 3485351 >seq10923 Length=1010 Score = 86.0 bits (94), Expect = 5e-11 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 282334 TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATT 282393 |||||| || || || || | ||||||||||| ||||| || || || | || | Sbjct 985 TTTATCCAGGCCGTAAGCCAGGGCAGCAGCAGTCGGTTCGTTGATGATACGTTTTACTTC 926 Query 282394 AAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 282453 ||||| || || | || || |||||||| || || | |||| ||||| || ||||| Sbjct 925 CAGACCTGCGATACGACCGGCGTCTTTAGTCGCCTGACGCTGTGCGTCGTTGAAGTATGC 866 Query 282454 AGGAACAGTAATAACGGCATCTGTTAC 282480 ||||||||| ||||| || || ||||| Sbjct 865 AGGAACAGTGATAACCGCTTCAGTTAC 839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739900787702586