Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_023688.1 Length=222006 Score E Sequences producing significant alignments: (Bits) Value seq4204 194 2e-44 seq5078 120 4e-22 >seq4204 Length=800 Score = 194 bits (214), Expect = 2e-44 Identities = 265/366 (72%), Gaps = 8/366 (2%) Strand=Plus/Minus Query 28670 ACGGTGCCAGCACTTCGTCAATGCGATTGATTGTGTTACCGCCATAAATGTGACTTGCTA 28729 |||| ||||| | ||||| ||||| || || ||| | || |||||||| || || || | Sbjct 799 ACGGCGCCAGGATCTCGTCGATGCGGTTAATGGTGGTGCCACCATAAATATGGCTGGCGA 740 Query 28730 CTTGAGCGATGATTTGAGCAATCACGGCAGCAGCGGTAGAAATGCTTTTCGGAGTCTCGA 28789 | || |||||||| || || | ||||| | ||||| || || ||||| | |||| Sbjct 739 CCTGTGCGATGATCTGTGCGGTGACGGCGGTCGCGGTGGAGATCGACTTCGGTGGTTCGA 680 Query 28790 TTTGAGCATTACCCATTCTGAAACCACGTT--TCAACATTCCTTCAACATCTATCAACAT 28847 | | |||||||||||| |||| | |||| ||| ||| |||| | ||| |||| ||| Sbjct 679 TCTCGGCATTACCCATTTTGAAGC--CGTTGGTCAGCATGCCTTTCAAATCGATCAGCAT 622 Query 28848 GCAGTTAAACATTGGGAAGAACGGTGAATAATCAAGATCGTGGAAGTGAATC-CAACCAT 28906 |||||| ||||| |||||||| || || ||||| ||||||||| |||| ||| | | Sbjct 621 GCAGTTGAACATAGGGAAGAAGGGCGAGTAATCGAGATCGTGGTAGTGGATCTCGCCGCG 562 Query 28907 TTTCGTGTGCTTGCATAACTTCAACAGGCAG---ATAATGCTTGGCGAAATGCTTACTAA 28963 |||||| || ||| || ||| ||||| || || |||||| ||||||| | Sbjct 561 CTTCGTGGGCCAGCACCACGTCACGTGGCAGGATATGCTGTTTGGCGTAATGCTTGGCGA 502 Query 28964 CGATACCAGCTACCAAATCGCGTTGAGTTGGAATTACCTTGGCGTCTTTGTTTGCATTTT 29023 |||| || || | || ||||| || || || || |||||| |||||| || ||||||| Sbjct 501 CGATCCCGGCCAGCAGGTCGCGCTGGGTGGGGATCACCTTGCTGTCTTTATTGGCATTTT 442 Query 29024 CATTCA 29029 | |||| Sbjct 441 CGTTCA 436 >seq5078 Length=902 Score = 120 bits (132), Expect = 4e-22 Identities = 276/413 (67%), Gaps = 6/413 (1%) Strand=Plus/Minus Query 27256 TGTTTAACACGTTTTTGCACTTCGTCCTGCTTGCCGGCATTAAATGCGCGAGAACCGGGG 27315 ||||| || || || |||||| ||||||||||| || || || | | | | | ||| Sbjct 412 TGTTTCACCCGGCGTTTCACTTCTTCCTGCTTGCCTGCGTTGAACGGTCTGGCATCCGGG 353 Query 27316 TTCCCCAAATAACCGCAGACGCGACGAATAACGTTCATTTTGGTATCATCATGATTGCCG 27375 | || | || ||||| || ||||| ||||| || |||| || ||||| ||| Sbjct 352 CTACCGAGGTAGCCGCACACCCGACGCGTAACGGACACCTTGGATGGCTCGTGATTACCG 293 Query 27376 CACTTAGGACATTCATATCCTTTAGATGTAGCAGTGAATTCGCCGTGATAACCGCATTCA 27435 || || || || | ||||| ||| | |||||||||| | | || || || Sbjct 292 CATTTCGGGCAGGTGAAGCCTTTGCTGGTACAGGAGAATTCGCCGGTAAAGCCACACTCG 233 Query 27436 AAACAAACATCAACTGGGGTATTGGTCCCATAATACGGGGTATTCCTATAAGCATAATCC 27495 | || |||| | || || ||||| || ||||| || || || |||||| Sbjct 232 TAGCACTCATCGATCGGCGTGTTGGTACCGTAATAAGGCACGCGGCTGTAGCTGTAATCC 173 Query 27496 CAAACATCTTCGAGAGCTTTCAGATTATCTTTCATATTCGGATATTCACCGTATGAAATA 27555 || |||||||| || |||||||| || | || || ||||| ||||| ||||| | || Sbjct 172 CATACATCTTCCAGTGCTTTCAGGTTGTGTTGCAGGTTCGGGTATTCGCCGTAACAGATG 113 Query 27556 AAACCACCA--GAACTA-AGCGGAATGAATTGCTTTTCAAAATCGATCTTGTCATACGGA 27612 || || ||| | | | |||| | | || ||||||||| | |||||| |||||| Sbjct 112 AACCCCCCATTGGCCAATGGCGG---GTAAGGCGCTTCAAAATCCAGCTTGTCGTACGGA 56 Query 27613 TTTGTATTATGACGAACGTCCAGATGGAAACTGTTGGTATAATAATCCTTATC 27665 || || | |||||||||||||| |||||||| ||||| |||| || Sbjct 55 TTGACCTTTTTCTCTACGTCCAGATGGAAGCTGTTGGTGTAATAGCCCTTGTC 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 710159254530960