Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_023717.1 Length=151924 Score E Sequences producing significant alignments: (Bits) Value seq2293 224 1e-53 >seq2293 Length=1342 Score = 224 bits (248), Expect = 1e-53 Identities = 277/376 (74%), Gaps = 2/376 (1%) Strand=Plus/Minus Query 121985 GATGTCGTCAAAGACGATCGACGGGTCTGCCAGGATGTTGCGGATGATGTGGGTGTACGA 122044 ||| || ||||| ||||||| ||| || | ||| || ||||| || ||||| || || Sbjct 1080 GATATCATCAAATACGATCGCCGGATCGTTGACGATATTACGGATAATATGGGTATAAGA 1021 Query 122045 ACGAGAGTGAATAGTCTCACTGAACGCCCAAGTCTCCACCCAAGTTTCCAGGGTGGTGTC 122104 ||| ||||| || ||||| ||| | ||| || |||||||| |||||||| | | Sbjct 1020 ACGGGAGTGGATGGTCTCGGAGAATGACCAGGTTTCCACCCAGGTTTCCAGTTCCGGGAT 961 Query 122105 GGATACGATCGGCAGAAGAACTGCGTTCGGGCCACGGCCCTGTACAGAGTCCAGAAGGAT 122164 || | | ||||| | | ||||||||| |||||||| | || |||| || | Sbjct 960 TGAGATCAGCGGCAACAAGGCCACGTTCGGGCTGCGGCCCTGAATCGAATCCAACAGCGT 901 Query 122165 CTGATACTTCAGGTTGCTGATGAAGATGTGCTTCTCGTGATCCGGAAGATTCATG-TAGT 122223 ||| || ||||| ||||||||||| ||||| ||||| |||||||| || | | || |||| Sbjct 900 CTGGTATTTCAGATTGCTGATGAAAATGTGTTTCTCATGATCCGGCAG-TGCCTGATAGT 842 Query 122224 CAATTCGGTCACGGGTCACGTTCACCTCTTCCGGACGCCAGAAGAATGCCAGTTGCTTTT 122283 |||| ||||| |||| |||| || ||||| |||||||||||||| | ||| || || | Sbjct 841 CAATACGGTCGCGGGAGACGTCAACTTCTTCAGGACGCCAGAAGAAAGACAGCTGTTTCT 782 Query 122284 CGATCAGCTTTTCGAACTTAGCGTGTTTTTGCTGGTCATAACGAGAAACGTTCGGCGTCT 122343 | ||||| |||||||| | | ||||||||||| || |||| | |||||| || || Sbjct 781 CAATCAGTTTTTCGAAAATTTCATGTTTTTGCTGATCGAAACGCGCAACGTTAACCGACT 722 Query 122344 CACCGAGGAACATCGG 122359 ||||| |||||||| Sbjct 721 GACCGAAAAACATCGG 706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 485938514075040