Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_024354.1 Length=149162 Score E Sequences producing significant alignments: (Bits) Value seq2293 239 4e-58 >seq2293 Length=1342 Score = 239 bits (264), Expect = 4e-58 Identities = 280/376 (74%), Gaps = 2/376 (1%) Strand=Plus/Minus Query 118889 GATGTCATCAAAGACGATCGACGGATCTGCCAGGATGTTACGGATGATATGGGTGTATGA 118948 ||| |||||||| ||||||| |||||| | ||| |||||||| |||||||| || || Sbjct 1080 GATATCATCAAATACGATCGCCGGATCGTTGACGATATTACGGATAATATGGGTATAAGA 1021 Query 118949 GCGAGAGTGGATAGTCTCACTGAACGCCCAAGTCTCTACCCATGTTTCCAGGGTTGTGTC 119008 || |||||||| ||||| ||| | ||| || || ||||| |||||||| | | Sbjct 1020 ACGGGAGTGGATGGTCTCGGAGAATGACCAGGTTTCCACCCAGGTTTCCAGTTCCGGGAT 961 Query 119009 GGACACGATCGGGAGCAGAACTGCGTTCGGCCCACGGCCCTGTACAGAATCCAGAAGGAT 119068 || | | ||| | || | ||||||| | |||||||| | ||||||| || | Sbjct 960 TGAGATCAGCGGCAACAAGGCCACGTTCGGGCTGCGGCCCTGAATCGAATCCAACAGCGT 901 Query 119069 CTGGTACTTCAGGTTGCTGATGAAGATGTGCTTCTCGTGATCCGGCAGATTCATG-TAGT 119127 |||||| ||||| ||||||||||| ||||| ||||| ||||||||||| | | || |||| Sbjct 900 CTGGTATTTCAGATTGCTGATGAAAATGTGTTTCTCATGATCCGGCAG-TGCCTGATAGT 842 Query 119128 CGATACGGTCACGGGTCACGTTAACTTCTTCCGGACGCCAGAAGAACGCCAGTTGCTTCT 119187 | |||||||| |||| |||| ||||||||| |||||||||||||| | ||| || |||| Sbjct 841 CAATACGGTCGCGGGAGACGTCAACTTCTTCAGGACGCCAGAAGAAAGACAGCTGTTTCT 782 Query 119188 CGATCAGCTTCTCGAACTTGGCGTGTTTCTGCTGGTCATAGCGAGAAACGTTCGGTGTCT 119247 | ||||| || ||||| | | ||||| ||||| || | || | |||||| | || Sbjct 781 CAATCAGTTTTTCGAAAATTTCATGTTTTTGCTGATCGAAACGCGCAACGTTAACCGACT 722 Query 119248 CGCCGAGGAACATCGG 119263 |||| |||||||| Sbjct 721 GACCGAAAAACATCGG 706 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 119926 CACGAGGTGGCTCAAAACCGTTCGTGGAGTTGGTAATCTGACTGGACGTCTCGCAAGGCA 119985 |||| |||||||||| ||||| |||| ||||| |||||| || || || |||||| Sbjct 215 CACGTGGTGGCTCAATGCCGTTGGTGGCGTTGGAAATCTGCGAAGAGGTTTCCGAAGGCA 156 Query 119986 TCATCGTGGACAGCGTAGAGTTACGCAGTCCATGAATAGCGATGTCGATACGCAGCTTTT 120045 ||| || ||||| || ||||||||||| || |||| || |||||| | ||| Sbjct 155 TCAGCGCTGACAGGGTGGAGTTACGCAGACCGGTTTCCACGATCTCTTTACGCAACGTTT 96 Query 120046 CCCAATCCATCTTCAGTTCCGCAGTGTGGAGGCCATCTACCTCTTTCTTGTAACGGTCGA 120105 |||| || | ||| | | | | | |||| | ||||||||||| ||||| Sbjct 95 CCCAGTCGTAGTGCAGAGGCTCCTGGCAAATGACATCCAAATCTTTCTTGTAGGTGTCGA 36 Query 120106 TCGGCAGAATGCCCTGAGAGTAAGTGGTCTC 120136 | |||| || ||||| || || ||||| || Sbjct 35 TTGGCAAGATACCCTGCGAATAGGTGGTTTC 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477101755918320