Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq14564 120 3e-22 seq14857 107 2e-18 seq14858 105 6e-18 seq21 95.1 1e-14 seq57 82.4 7e-11 >seq14564 Length=527 Score = 120 bits (132), Expect = 3e-22 Identities = 176/249 (71%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 24803 TACTTTGTCGAGTGGGGTGTGTACCCGCGCCAGTTTCCCGTCGACAAGGTGCCCGCGCCC 24862 || ||||| || ||||| || ||| || | || ||||||| ||| |||| |||| Sbjct 279 TATTTTGTGGAATGGGGCGTATACGGCCGTAATTTCACCGTCGATAAGCTGCCGGCGCAA 338 Query 24863 AACCTCTCGCACTTGCTCTACGGCTTTGTGCCCATCTGCGGCGGCGCGGGCATCAACGAT 24922 ||||| |||| ||||| ||||| ||| | || ||||| ||||| | ||||||||||| Sbjct 339 AACCTGACGCATTTGCTGTACGGGTTTATCCCGATCTGTGGCGGTGATGGCATCAACGAC 398 Query 24923 GCGCTAAAAACTGTGCCGGGCAGCTTCGAGGCGCTGCAACGATCGTGCGCCGGCCGCGCC 24982 || ||| | || |||||| ||||| |||| || || ||| ||||| | Sbjct 399 AGTCTGAAAGAGATCGAAGGTAGCTTCCAGGCGTTGCAGCGTTCCTGCCAGGGCCGTGAG 458 Query 24983 GACTTCAAGGTGGCCATCCACGATCCGTGGGCGGCCATACAGAAACCGCAGAAAGGCGTG 25042 ||||| || ||| | ||||||||||||| || || | |||||| || || ||||| Sbjct 459 GACTTTAAAGTGTCAATCCACGATCCGTTTGCCGCGTTGCAGAAAGGCCAAAAGGGCGTT 518 Query 25043 TCCGCGTGG 25051 |||| ||| Sbjct 519 ACCGCCTGG 527 >seq14857 Length=2032611 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 ||||| || ||||| || ||||| ||| | || |||||||||||||||||| Sbjct 1173526 GTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCTGCCGTCCTCGAGCTGCTTGCCT 1173467 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || || ||||||||||| || || || || ||||| || ||||| |||| Sbjct 1173466 GCGAAGATCAGACGCTGCTGGTCAGGCGGAATTCCCTCCTTATCCTGAATCTTGGCCTTG 1173407 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | || | ||||| | ||||| ||||| | |||| || |||||||| || || Sbjct 1173406 ACATTTTCGATGGTGTCAGAAGGCTCGACGTCCAAAGTGATCGTCTTGCCGGTGAGCGTC 1173347 Query 133644 TTTACGAAAATCTGCAT 133660 || |||||||||||||| Sbjct 1173346 TTCACGAAAATCTGCAT 1173330 >seq14858 Length=1827956 Score = 105 bits (116), Expect = 6e-18 Identities = 144/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTGC 133521 || ||||| ||||| || ||||| || || || || || ||||| | |||||||| Sbjct 1580253 GTCGACTCCTTCTGAATGTTGTAGTCAGACAGAGTTCGGCCG--TCCTCCAACTGCTTGC 1580196 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || |||| || |||||||| || || || || ||||||||||| ||||||| || Sbjct 1580195 CAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGGATCTTTGCCT 1580136 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| | ||||| || || | |||| ||| || ||||| |||| Sbjct 1580135 TCACATTCTCGATGGTGTCTGACGGCTCAACATCAAGCGTGATGGTCTTTCCGGTAAGAG 1580076 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || |||||||| Sbjct 1580075 TCTTCACAAAGATCTGCAT 1580057 Score = 105 bits (116), Expect = 6e-18 Identities = 144/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTGC 133521 || ||||| ||||| || ||||| || || || || || ||||| | |||||||| Sbjct 1580882 GTCGACTCCTTCTGAATGTTGTAGTCAGACAGAGTTCGGCCG--TCCTCCAACTGCTTGC 1580825 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || |||| || |||||||| || || || || ||||||||||| ||||||| || Sbjct 1580824 CAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGGATCTTTGCCT 1580765 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| | ||||| || || | |||| ||| || ||||| |||| Sbjct 1580764 TCACATTCTCGATGGTGTCTGACGGCTCAACATCAAGCGTGATGGTCTTTCCGGTAAGAG 1580705 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || |||||||| Sbjct 1580704 TCTTCACAAAGATCTGCAT 1580686 Score = 102 bits (112), Expect = 8e-17 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTGC 133521 || ||||| ||||| || ||||| || || || || || || || | |||||||| Sbjct 1581110 GTCGACTCCTTCTGAATGTTGTAGTCAGACAGAGTTCGGCCG--TCTTCCAACTGCTTGC 1581053 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || |||| || |||||||| || || || || ||||||||||| ||||||| || Sbjct 1581052 CAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGGATCTTTGCCT 1580993 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| | ||||| || || | |||| ||| || ||||| |||| Sbjct 1580992 TCACATTCTCGATGGTGTCTGACGGCTCAACATCAAGCGTGATGGTCTTTCCGGTAAGAG 1580933 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || |||||||| Sbjct 1580932 TCTTCACAAAGATCTGCAT 1580914 Score = 102 bits (112), Expect = 8e-17 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTGC 133521 || ||||| ||||| || ||||| || || || || || ||||| | |||||||| Sbjct 1581634 GTCGACTCCTTCTGAATGTTGTAGTCAGACAGAGTTCGGCCG--TCCTCCAACTGCTTGC 1581577 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || |||| || |||||||| || || || || ||||||||||| ||||||| || Sbjct 1581576 CAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGGATCTTTGCCT 1581517 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| | ||||| || || | |||| || || ||||| |||| Sbjct 1581516 TCACATTCTCGATGGTGTCTGACGGCTCAACATCAAGCGTGATAGTCTTTCCGGTAAGAG 1581457 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || |||||||| Sbjct 1581456 TCTTCACAAAGATCTGCAT 1581438 >seq21 Length=852027 Score = 95.1 bits (104), Expect = 1e-14 Identities = 81/100 (81%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 148864 TGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGAT 148923 ||||||| |||| || | ||||| |||||||||||||| |||| |||||| || | Sbjct 417942 TGTACTCGACGACTTCTGTGCACAAGTTGCTGCATTTGATAGTTCCCAAGTTCTTCTGGT 417883 Query 148924 TGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGG 148963 ||||||| | ||||| ||||| ||||||||||||||||| Sbjct 417882 TGCTCTTCCGATTGCAAGCGTCTTTGTACAGCATGTACGG 417843 >seq57 Length=138120 Score = 82.4 bits (90), Expect = 7e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 120640 AGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTC 120699 || ||||||||||| | |||||| ||||||||||| || |||| |||||| || || Sbjct 25617 AGACACGCAAAGTCTGCGTGCAGTCCCTCGTCGCGAGAAATCAACTCGTTCGAGAAAGTG 25676 Query 120700 AGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAG 120759 ||||| ||||| | |||| | |||| | |||| || ||| ||||| || ||| Sbjct 25677 AGGCCCGGCATCAAGCCTCGCTTCTTCAGCCAGAAAATAGCGCAGAAGCTTCCACTGAAG 25736 Query 120760 AACACGCCCTCCACGATGGCAAAGGCGACC 120789 | | ||| |||||| |||||| | ||| Sbjct 25737 AGAATGCCTTCCACGCATGCAAAGCCCACC 25766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483330998543640