Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq14857 116 9e-21 seq14858 84.2 5e-11 >seq14857 Length=2032611 Score = 116 bits (128), Expect = 9e-21 Identities = 139/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || |||||||| || || |||||||||||||| || || ||||||||| ||||| Sbjct 1173345 AAGACGCTCACCGGCAAGACGATCACTTTGGACGTCGAGCCTTCTGACACCATCGAAAAT 1173404 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||||| || || || |||||| ||| ||| || | || |||||| Sbjct 1173405 GTCAAGGCCAAGATTCAGGATAAGGAGGGAATTCCGCCTGACCAGCAGCGTCTGATCTTC 1173464 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| | || || || || || | |||| |||||| ||||||| || || Sbjct 1173465 GCAGGCAAGCAGCTCGAGGACGGCAGAACCCTTTCCGACTACAACATCCAGAAGGAATCC 1173524 Query 206365 ACTCTTCAC 206373 ||||| ||| Sbjct 1173525 ACTCTCCAC 1173533 >seq14858 Length=1827956 Score = 84.2 bits (92), Expect = 5e-11 Identities = 157/230 (68%), Gaps = 3/230 (1%) Strand=Plus/Plus Query 206161 GCTAAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTG 206220 || |||||| ||||| ||| || || || || ||||| || ||||| | || || Sbjct 1580051 GCCAAAATG---CAGATCTTTGTGAAGACTCTTACCGGAAAGACCATCACGCTTGATGTT 1580107 Query 206221 GAAAGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTG 206280 || || ||||| |||| || ||| |||||| || || || ||||| ||| Sbjct 1580108 GAGCCGTCAGACACCATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGTATTCCC 1580167 Query 206281 CCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCC 206340 || || || | || || || || || ||||||||||| || || | ||| || | Sbjct 1580168 CCTGATCAGCAGCGTCTGATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGAACTCTGTCT 1580227 Query 206341 GATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || |||||| | ||||| ||||| ||||| ||| | || ||| | ||||| Sbjct 1580228 GACTACAACATTCAGAAGGAGTCGACTCTCCACTTGGTCTTGCGTCTTCG 1580277 Score = 84.2 bits (92), Expect = 5e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || || ||||| || ||||| | || || || || ||| Sbjct 1580917 CAGATCTTTGTGAAGACTCTTACCGGAAAGACCATCACGCTTGATGTTGAGCCGTCAGAC 1580976 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| |||||| || || || ||||| ||| || || || Sbjct 1580977 ACCATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGTATTCCCCCTGATCAGCAG 1581036 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || || || || || |||||||||||||| || | ||| || | || |||||| | Sbjct 1581037 CGTCTGATTTTTGCTGGCAAGCAGTTGGAAGACGGCCGAACTCTGTCTGACTACAACATT 1581096 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTT 206388 ||||| ||||| ||||| ||| | || ||| | ||| Sbjct 1581097 CAGAAGGAGTCGACTCTCCACTTGGTCTTGCGTCTT 1581132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181595773563981