Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_025414.1 Length=178171 Score E Sequences producing significant alignments: (Bits) Value seq4204 118 1e-21 seq2293 100 3e-16 >seq4204 Length=800 Score = 118 bits (130), Expect = 1e-21 Identities = 212/303 (70%), Gaps = 5/303 (2%) Strand=Plus/Plus Query 154260 AACGAGAACGCGAACAAAGAC-GCAAGGGTTTTCCCGACACAGCGCGATCTGTTGGCGGG 154318 ||||| || || || |||||| |||||| | |||| || |||||||| ||| |||| || Sbjct 438 AACGAAAATGCCAATAAAGACAGCAAGG-TGATCCCCACCCAGCGCGACCTGCTGGCCGG 496 Query 154319 TATCGTAGCGAAACACTTCGCACGTAACCACATTCTACCAAAACACATCGTAGAAGCGCA 154378 ||||| || || || | ||| | || || || ||| || | || || || Sbjct 497 GATCGTCGCCAAGCATTACGCCAAACAGCATATCCTGCCACGTGACGTGGTGCTGGCCCA 556 Query 154379 TGATTCT-GGTGATATCCATTATCATGATCTGGATTACAGCCCGTTCACGCC-ATACACA 154436 || | || || ||||| || || ||||| |||||| || ||| || || || Sbjct 557 CGAAGCGCGGCGAGATCCACTACCACGATCTCGATTACTCGCCCTTCTTCCCTATGTTCA 616 Query 154437 AACTGCTGTCTGGTGGATTTGAAAGGTATGCTGGCTAATGGCTTCAAGATGGGTAACGCA 154496 | |||| ||| | ||||||||||| |||||| | || |||||||| |||||||| || Sbjct 617 A-CTGCATGCTGATCGATTTGAAAGGCATGCTGACCAACGGCTTCAAAATGGGTAATGCC 675 Query 154497 GACATCGAACCCCCGAAATCAATCGGTGTTGCGACTGCTCTTATGGCACAGATCACCGCA 154556 || |||||||| ||||| || ||| ||||| || | | |||||||||| |||| Sbjct 676 GAGATCGAACCACCGAAGTCGATCTCCACCGCGACCGCCGTCACCGCACAGATCATCGCA 735 Query 154557 CAG 154559 ||| Sbjct 736 CAG 738 >seq2293 Length=1342 Score = 100 bits (110), Expect = 3e-16 Identities = 211/312 (68%), Gaps = 2/312 (1%) Strand=Plus/Plus Query 42926 GTTGCCCGATATGAAGAACAAAAACATCGCGTATTCGAAACTTTGACTGAAAAACAACTA 42985 ||||| || | || | ||||||||| | ||||||| ||| ||| ||||| || Sbjct 733 GTTGCGCGTTTCGATCAGCAAAAACATGAAATTTTCGAAAAACTGATTGAGAAACAGCTG 792 Query 42986 TCATTCTTCTGGCGACCGGAAGAAGTGGATCTGTCGATCGACCGTATGCAGTATGCAAAA 43045 || ||||||||||| || |||||||| || | || ||||||||| | ||| | Sbjct 793 TCTTTCTTCTGGCGTCCTGAAGAAGTTGACGTCTCCCGCGACCGTATTGACTATCAGGCA 852 Query 43046 ATGCCGGAACACGAGAAAATCATTTTTGATTCTAACCTGCAATATCAAACCCTGTTAGAT 43105 ||||||| || |||||| |||||| || ||| |||| || || ||||| ||| Sbjct 853 CTGCCGGATCATGAGAAACACATTTTCATCAGCAATCTGAAATACCAGACGCTGTTGGAT 912 Query 43106 ACCATTCAGGGACGTGGCCCTAACCTGGCGTTTCTCCCGATTGCCTCTGATGTTTCAA-T 43164 | |||||||| || |||| ||| |||| || | ||| | ||| || || | Sbjct 913 TCGATTCAGGGCCGCAGCCCGAACGTGGCCTTGTTGCCGCTGATCTC-AATCCCGGAACT 971 Query 43165 GGAAACGTGGATCGAAACATGGGCTTTCAGTGAAACAATTCATAGCCGCAGTTATACACA 43224 |||||| ||| | ||||| ||| | ||| || || || || ||| |||||| || Sbjct 972 GGAAACCTGGGTGGAAACCTGGTCATTCTCCGAGACCATCCACTCCCGTTCTTATACCCA 1031 Query 43225 CATTCAGCGTAA 43236 ||| ||||| Sbjct 1032 TATTATCCGTAA 1043 Score = 86.0 bits (94), Expect = 7e-12 Identities = 283/434 (65%), Gaps = 11/434 (3%) Strand=Plus/Plus Query 42337 CGATTGGGAATGGTTGCGCGACGAAATCAAAAAATATGGCTTGCGTAACTCAACTCTTTC 42396 ||| |||||| |||||| | || ||| || || |||||||||| || || || Sbjct 88 CGACTGGGAAACGTTGCGTAAAGAGATCGTGGAAACCGGTCTGCGTAACTCCACCCTGTC 147 Query 42397 CGCTTTAATGCCATGTGAGAGTAGTTCTCAAGTAAGCAACTCAACAAACGGGATTGAACC 42456 || | ||||| | || | ||| || | |||| | || ||||| ||||| || Sbjct 148 AGCGCTGATGCCTTCGGAAACCTCTTCGCAGATTTCCAACGCCACCAACGGCATTGAGCC 207 Query 42457 GCCTCGCGGTCCTGTGAGTGTGAAATCTTCGAAAGAAGGT-TCATTCAACCAGGTAGTAC 42515 || || || | | ||| | ||| | |||||||| ||| | || ||||||||| | Sbjct 208 ACCACGTGGCCACATCAGTATCAAAGCGTCGAAAGACGGTATTTTTGCGCCAGGTAGTGC 267 Query 42516 C-GAACCAGAACGATCAGATTGATTTCTATGATTATCTCTGGACAATGGCAAAACGCGGT 42574 | ||| || || || || | ||| || || ||| |||| | || || Sbjct 268 CAGAATATGAGCG-TCTGAAAAACGACTACGAACTGCTGTGGGAAATGCCGAACAACG-- 324 Query 42575 AATAAAGGTTATCTGTCTCATGTTGCTGTTATGCAGAAGTTTGTTGATCAAGCGATCTCT 42634 | ||||| ||| | || | | | |||||||| ||| | || || |||| ||| Sbjct 325 ----ACGGTTACCTGCAACTGGTCGGTCTGATGCAGAAATTTATCGACCAGTCGATTTCT 380 Query 42635 GCAAACACCAACTATGATCCGGCTAACTTCCCAGATGGTAAAGTGAAATCTGAAACCATC 42694 || |||||||||||||||||| | ||||| | || || ||| | |||| | Sbjct 381 GCCAACACCAACTATGATCCGACCCGTTTCCCTGGCGGCAAGGTG-CCTATGAAGCAGCT 439 Query 42695 ATTG-ATGACCTGCTTTATGCGAACTACTACGGCGTGAAAACTCTGTATTATCACAACAC 42753 ||| | |||||||| | || | | || || || || ||||||||||| ||||| Sbjct 440 GTTGAAAGACCTGCTCACCACCTACAAGTTTGGTGTCAAGACGCTGTATTATCAGAACAC 499 Query 42754 CCGCGACGGTGCAG 42767 |||||||||||||| Sbjct 500 CCGCGACGGTGCAG 513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569913311808360