Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_025429.1 Length=156446 Score E Sequences producing significant alignments: (Bits) Value seq2705 91.5 1e-13 seq9046 84.2 2e-11 >seq2705 Length=325 Score = 91.5 bits (100), Expect = 1e-13 Identities = 125/178 (70%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 148838 TCATCGAGCGTATNNNNNNNNNNGAAGAAGAGAAGAAGACGATCGGCGATGACATCAAGG 148897 |||||||||| || || |||||||||||||| ||| |||| |||||||||| Sbjct 119 TCATCGAGCGCATCGAGAAGCTGGAGGAAGAGAAGAAGACCATCAGCGACGACATCAAGG 178 Query 148898 ACGTCTACGGCGATGCCAAAGGAAATGGCTTCGACACCAAGATCTTGAAGAAGGTCATCA 148957 ||||||| || || ||||| || || ||||||||| |||| || | | ||| Sbjct 179 ACGTCTATGGTGAAGCCAAGGGCAACGGCTTCGACGTCAAGGCGCTGCGCACCATTATCC 238 Query 148958 ACATCCGCAAGAAGGATGAGCAGGAGCGCATGGAAGAGGAAGCAATCCTCGATACGTA 149015 ||| |||||| |||| | | ||||| |||| |||| | ||||| || || || Sbjct 239 GCATGCGCAAGCAGGACGCCGACGAGCGTCAGGAACAGGAGACGATCCTGGAAACCTA 296 >seq9046 Length=208 Score = 84.2 bits (92), Expect = 2e-11 Identities = 109/149 (73%), Gaps = 5/149 (3%) Strand=Plus/Plus Query 142561 ATCGTCACCGCGTGGAACCCTGCTGAAGTCGACGACATGGCACTTCCTCCGTGTCACATG 142620 ||||||| ||| ||||| || || || || ||| | ||||| || || ||||| ||| Sbjct 64 ATCGTCAGCGCCTGGAATCCGGCCGAGGTGGACAAGATGGCGCTGCCGCCGTGCCACTGC 123 Query 142621 ATGTTCCAATTCCACGTCGACT-CGAAGAAGCGTCTGTCATGCCAGCTGTATCAGCGTTC 142679 ||||||| ||| | |||| | || | || |||| |||||||| |||||||| || Sbjct 124 CTGTTCCAGTTCTATGTCGCCAACGGAAAAT----TGTCCTGCCAGCTCTATCAGCGCTC 179 Query 142680 GGCAGACTGGTTCCTCGGCGTTCCGTTCA 142708 | ||| |||||||||||| || |||| Sbjct 180 CGGCGACGTGTTCCTCGGCGTGCCCTTCA 208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500406226017360