Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_025434.1 Length=62699 Score E Sequences producing significant alignments: (Bits) Value seq10212 188 3e-43 >seq10212 Length=656 Score = 188 bits (208), Expect = 3e-43 Identities = 439/649 (68%), Gaps = 20/649 (3%) Strand=Plus/Minus Query 525 GCTGCATATCGATTTGTTGCCACTCCAGATTAATAATGTTTGATCTCCTCAGGCCAGTTG 584 |||||||||||||||| ||| | || | |||||||| || | | |||||||| | Sbjct 656 GCTGCATATCGATTTGCGACCAGGCAAGTTCGATAATGTTAGAGCGACGGAGGCCAGTGG 597 Query 585 CCAGTGCAAATTTAACTACAGATTTCAGGGGATCAGAACATGCATCAA-TGAGTCTCCTG 643 |||||||||| ||| |||||| || || || | || |||| | | || | || Sbjct 596 TTAGTGCAAATTCAACGGTAGATTTAAGAGGTTCTGGGCACTCATCTACTAAGCGTTGTG 537 Query 644 GCTTCTTCTTTTTCCAGCCATCTCACGCGTTTGTTT-TTTACGGCAGGTATTTTGATTAC 702 || | ||| ||||| | || || |||||| ||| | || || | ||||| || Sbjct 536 CCTGAG-CGGGTTCGAGCCACCGAACTCGCTTGTTTCTTTCCTGC-GGCACCTTGATCAC 479 Query 703 AGGTGCTTTTTCAAGCCATTTCCAGTCTCGCTCTGCGGCGCGCAGAATAGCCTTGATCAT 762 |||| ||||| | ||| ||||| || | || || || |||| || |||||| |||| Sbjct 478 TGGTGACTTTTCTATCCACTTCCAATCCCTTTCCGCAGCCCGCATAAGAGCCTTCATCAA 419 Query 763 TGCCAGGTGTGTTGCTTTTGTTTGCGTGCTCACCGATTTAGGTATATAGGCTGGTGGTT- 821 || ||||| | || |||||| || || | | || || | || || ||| Sbjct 418 AGCAAGGTGCTTAGCCTTTGTTGAAGTTGAAACGGCCTCAG--ATTTTCGC-GGCGGTAT 362 Query 822 --CTTTCCCTTTTCTTAATGCA--GCCTCCACCTGCAACTTCCATCTCTCCTTTGTTTTT 877 | | ||||| |||| || || || || ||| | ||| | ||||| || || Sbjct 361 CACAATGCCTTT-CTTAGC-CATTGCATCAACACGCATTTGCCAGCGCTCCTCTGCCTTC 304 Query 878 CGGTTATACGCTTTGCTGATAACTGAG---TAGATCATTGCCTCCGATATATCCTTAATC 934 | ||| | ||| | |||||| | ||||| ||||||| | ||||||||| | Sbjct 303 C---TATTGGTCATGCGGCTAACTGCGGTGTAGATTTTTGCCTCGGTTATATCCTTCAAT 247 Query 935 CTTATTCCCTCGAAATGCTCAATCCAGAATGCGATTCTGGATTTATCGGAATCGATGGAT 994 | ||||| |||||| | ||||||| | || | | || || | ||||| ||| Sbjct 246 AAAACCCCCTCAAAATGCATGAGCCAGAATCCAATCCGGCCCTTGTCTGCATCGAGTGAT 187 Query 995 TTCTTGTCGGCTTTTTCCTCAAGCCATCTCAGGCAGGCTTCTTCGAAAGTGACATCTGGC 1054 ||||||| |||||||| || | ||| | |||||| || ||||| || || |||| || Sbjct 186 TTCTTGTGCGCTTTTTCTTCTAACCAGCGCAGGCAAGCCTCTTCAAATGTCACATTCGGG 127 Query 1055 ATATCCCCCAGTCTGTCTACTCGCCAGAGTTCTGCTTTTCGCTTGTCGTGCAACTCCTGA 1114 | ||||||| | |||| || ||| ||||| ||||||| |||||||| |||||| Sbjct 126 AAGTCCCCCAAACGCTCTATTCTCCAAAGTTCAGCTTTTCTACGGTCGTGCAGCTCCTGC 67 Query 1115 GCTTGCCGCTTGTCCTTTGTGCCAAGAGACTCCTTAATTCGCTTCCCGC 1163 ||||| || ||||| || ||||| || |||||||||||||| |||| Sbjct 66 GCTTGGCGTCTGTCCGAAGTCCCAAGCGATTCCTTAATTCGCTTGCCGC 18 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200475683579860