Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq21 159 3e-34 seq57 84.2 2e-11 >seq21 Length=852027 Score = 159 bits (176), Expect = 3e-34 Identities = 408/607 (67%), Gaps = 22/607 (4%) Strand=Plus/Minus Query 147172 TCACAGCTTGCCTCGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACG 147231 || || || |||||||| || | |||| || ||| ||| | | |||| | |||| Sbjct 418273 TCGCAACTGGCCTCGAGAGCGGCGAAGTAGATACACTCGAAGATGTTTCTGTTCAAGACG 418214 Query 147232 GTCGCTTCTTCGCTCTCGTAAGGCATA-CGCAGAAGCACAAAGGCATCGGCCAAACCCTG 147290 ||||| ||| ||| | || ||| || ||||||| ||||| || || | |||||| Sbjct 418213 CGAGCTTCGGGGCTGTCGAACGG-ATAGCGAAGAAGCATGAAGGCGTCTGCGAGACCCTG 418155 Query 147291 GATACCGACGCCGATAGGTCGATGCTTTTCGTTGCTGCGCTTCGCGCTCGCTATGGGATA 147350 || || | |||| |||||| || |||||| |||||| | | || || Sbjct 418154 GACTCCCAAACCGACAGGTCGGTGTCGCAAGTTGCTCTTCTTCGCTTCGGGCACAGGGTA 418095 Query 147351 GTGGTTGCGATCAATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATT-GTTTTGA 147409 || ||| ||||| || | ||| | ||| | | | ||||| ||| | || | Sbjct 418094 GTAGTTTCGATCGATCACGCGGTTCAAGTTTCTCGTCATGACTTTGACGATTCGCTTCAA 418035 Query 147410 GTTTCTCGAAATCATAAGTCCCGTCTTCGA----CACGTACGCATTGGTTCACGGCGATA 147465 || | ||||| || |||||| | ||| |||| || |||| || | || Sbjct 418034 GTGT-TCGAAGTCGAAAGTCCGGCTCTCGCGGTCCACGAAC---TTGGG-CAGCGAGACG 417980 Query 147466 GACGCCAGATTGCAGACGGCCGTCTCTTCGGCG-TCGCTGTACTGCACGATTTCGGCGCA 147524 || |||| |||||||| ||| ||| || | ||| |||||| |||| ||| | ||| Sbjct 417979 GAGGCCAAGTTGCAGACAGCCACCTCGTCTTTGCTCG-TGTACTCGACGACTTCTGTGCA 417921 Query 147525 CAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTC 147584 || |||||||||||| || |||||| || | ||| ||||| ||||||||||| ||||| Sbjct 417920 CAAGTTGCTGCATTTGATAGTTCCCAAGTTCTTCTGGTTGCTCTTCCGATTGCAAGCGTC 417861 Query 147585 TTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGAT---AAACCTATG 147641 |||| | ||||||||||| ||| ||||||| ||||| | | || ||||| | Sbjct 417860 TTTGTACAGCATGTACGGCGTGCCCGTCTCGATTTGCGCCTGGAGAATCGCAAACCAA-- 417803 Query 147642 CAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAA 147701 |||| ||| ||| | | | || |||| || || ||| |||||| ||||||||||| Sbjct 417802 -AGGTGCTGAGCTGGAATCGTCTTCCGACCCCGACCTTCGCGTTCGTAGCGCTCGTACAA 417744 Query 147702 CCGCTCAAACTCGTCGCCGTA-GCAATCGGCAAGGCCGGGACACTGATGCGGACACATCA 147760 | | || |||||||| | | || ||| ||||| |||| | |||||||||| Sbjct 417743 CTCTTTGAATTCGTCGCCCCACACCTCCGTCAAACCCGGG-CACTCGTTGGGACACATCA 417685 Query 147761 GCGACCA 147767 ||| ||| Sbjct 417684 GCGTCCA 417678 >seq57 Length=138120 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 46907 AGGCATAATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACA 46966 |||| | ||||||||||| || ||| ||||||||||| || |||||||| ||||| || Sbjct 25694 AGGCTTGATGCCGGGCCTCACTTTCTCGAACGAGTTGATTTCTCGCGACGAGGGACTGCA 25635 Query 46967 CACGGACTTTGCGTGTCTC 46985 | | ||||||||||||||| Sbjct 25634 CGCAGACTTTGCGTGTCTC 25616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476522663511960