Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_026242.1 Length=145704 Score E Sequences producing significant alignments: (Bits) Value seq41 91.5 1e-13 seq14858 89.7 5e-13 seq45 89.7 5e-13 seq2 89.7 5e-13 >seq41 Length=347658 Score = 91.5 bits (100), Expect = 1e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 39776 AGGCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCAA 39835 ||||||| |||||||||||| |||| |||||| | ||||||||||| ||||| |||| | Sbjct 151864 AGGCGGGCATGGTCTAGTGGCTATGACGTCTGCCTAACACGCAGAAGATCCCGAGTTCGA 151805 Query 39836 TCCCCGGTGCCCGTA 39850 ||| ||||||||||| Sbjct 151804 TCCTCGGTGCCCGTA 151790 >seq14858 Length=1827956 Score = 89.7 bits (98), Expect = 5e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 39774 TCAGGCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTC 39833 ||| ||||| |||||||||||| |||| |||||| | ||||||||||| ||||| |||| Sbjct 640856 TCAAGCGGGCATGGTCTAGTGGCTATGACGTCTGCCTAACACGCAGAAGATCCCGAGTTC 640915 Query 39834 AATCCCCGGTGCCCGTA 39850 |||| ||||||||||| Sbjct 640916 GATCCTCGGTGCCCGTA 640932 >seq45 Length=302190 Score = 89.7 bits (98), Expect = 5e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 39775 CAGGCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCA 39834 || ||||| |||||||||||| |||| |||||| | ||||||||||| ||||| |||| Sbjct 94779 CAAGCGGGCATGGTCTAGTGGCTATGACGTCTGCCTAACACGCAGAAGATCCCGAGTTCG 94720 Query 39835 ATCCCCGGTGCCCGTAT 39851 |||| |||||||||||| Sbjct 94719 ATCCTCGGTGCCCGTAT 94703 >seq2 Length=4461408 Score = 89.7 bits (98), Expect = 5e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 39778 GCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCAATC 39837 ||||| |||||||||||| |||| |||||| | ||||||||||| ||||| |||| ||| Sbjct 297001 GCGGGCATGGTCTAGTGGCTATGACGTCTGCCTAACACGCAGAAGATCCCGAGTTCGATC 296942 Query 39838 CCCGGTGCCCGTAT 39851 | |||||||||||| Sbjct 296941 CTCGGTGCCCGTAT 296928 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 39778 GCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCAATC 39837 ||||| |||||||||||| |||| |||||| | ||||||||||| ||||| |||| ||| Sbjct 296703 GCGGGCATGGTCTAGTGGCTATGACGTCTGCCTAACACGCAGAAGATCCCGAGTTCGATC 296644 Query 39838 CCCGGTGCCCGTA 39850 | ||||||||||| Sbjct 296643 CTCGGTGCCCGTA 296631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 466038211491840