Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq5 107 2e-18 seq9046 96.9 4e-15 >seq5 Length=2401786 Score = 107 bits (118), Expect = 2e-18 Identities = 170/243 (70%), Gaps = 3/243 (1%) Strand=Plus/Plus Query 146907 CAGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTG 146966 |||||| ||| | | ||| |||||||| |||||| |||| || ||||| | ||| Sbjct 2111809 CAGCTGCTCTTTTAAAGCCTCGACGTGGTTCGAGTAGACATGCGTGTTCCCCATGAAGTG 2111868 Query 146967 CACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTA 147026 | || |||| || || ||| | ||||| || |||||| || | ||||| || Sbjct 2111869 AATGAACTCCCTAGGTTTTAGGTTGCAGACGTGTGCAACCATGAGCGTCAAAAGCGAATA 2111928 Query 147027 GCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCA 147086 | || |||||||||||||| || ||||| | || | ||||| ||| |||| ||| Sbjct 2111929 GGAAGCAATGTTGAAGGGGACGCCGAGGCCGACATCGCACGACCGCTGATACATGATGCA 2111988 Query 147087 CGAGAGCTC---CCCGTCGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGC 147143 || | ||| | |||| |||||| ||||| |||| | |||||| |||||||| || Sbjct 2111989 GGACAACTCTTTCTGGTCGTTCACGTAGAACTGACACAACAAGTGGCAAGGCGGCAGAGC 2112048 Query 147144 CAT 147146 ||| Sbjct 2112049 CAT 2112051 >seq9046 Length=208 Score = 96.9 bits (106), Expect = 4e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 147038 TGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCC 147097 ||||||| || || ||| || ||| || || | ||| || |||||||| || | | | Sbjct 208 TGAAGGGCACGCCGAGGAACACGTCGCCGGAGCGCTGATAGAGCTGGCAGGACAATTTTC 149 Query 147098 CGTCGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGT 147157 ||| ||| || || |||||| ||||| ||||||||||||||||||||| | || | Sbjct 148 CGTTGGCGACATAGAACTGGAACAGGCAGTGGCACGGCGGCAGCGCCATCTTGTCCACCT 89 Query 147158 CCGCGGGGTTCCAGGCCGAGACCACCAGCCGCC 147190 | || || |||||||| ||| | |||||||| Sbjct 88 CGGCCGGATTCCAGGCGCTGACGATCAGCCGCC 56 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583379609810400