Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq3 98.7 1e-14 seq9797 95.1 2e-13 >seq3 Length=3704189 Score = 98.7 bits (108), Expect = 1e-14 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 1601276 ACCAGCGGCACCTGCGGGTAGCACAGGGCGTGCGACACCGTGTCGATGGCATGGTCGG-C 1601334 ||||||||| ||| || ||| |||| ||||| || |||||| || ||||| | | Sbjct 2742231 ACCAGCGGCTTCTGGGGATAGTACAGCAAGTGCGCCAGCGTGTCCATCCGATGGTTGAAC 2742172 Query 1601335 GTTGAGCGACACGACGGCCTTGCTCTGCTTGCCCATGGCCGTCTGGTAGATGTTGCGCGG 1601394 | ||| || || || | |||||| ||||| |||| ||| |||| ||| ||||| Sbjct 2742171 GACGAGGTGTAC-ACTCCCATCGCCTGCTTCCCCATAGCCGACTGATAGACGTTACGCGG 2742113 Query 1601395 CGCCTGGTTGTGGTTGGAAAACGGGATGATGGACGCGCAGGCGCCCAGCATGAGCAGCGG 1601454 | ||||||||||| | |||||| |||||| |||||| | ||||| || ||| || Sbjct 2742112 AGACTGGTTGTGGTCTGGAAACGGAATGATGCTCGCGCAAACTCCCAGAATCAGCGAGGG 2742053 Query 1601455 GTGGACCTCGACGTGCGT 1601472 ||| | |||| |||||| Sbjct 2742052 GTGAATCTCGCAGTGCGT 2742035 >seq9797 Length=509 Score = 95.1 bits (104), Expect = 2e-13 Identities = 89/111 (80%), Gaps = 2/111 (2%) Strand=Plus/Plus Query 258064 TTGACCAAACTGGGCGGCGTGGGCGTGCCCGGCTGCACCGAAAACGACATCCCATGTGCC 258123 ||||||| |||||||| ||| || ||||||| ||||||| || ||| ||| || ||| Sbjct 83 TTGACCAGGCTGGGCGGGGTGCGCACGCCCGGCCGCACCGAGAAGCACAGCCCGTGCGCC 142 Query 258124 TGGCGCTCATGGATG-TAGGGATCCTGGCCGAGGATGACGACGGCCACGTC 258173 |||| ||| ||| ||||||||||||||||||||||||||| ||||| Sbjct 143 TGGCCCTCGCC-ATGATAGGGATCCTGGCCGAGGATGACGACGCGGACGTC 192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176377829235482