Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq14857 129 6e-25 seq14858 123 3e-23 seq14564 93.3 4e-14 seq21 91.5 1e-13 >seq14857 Length=2032611 Score = 129 bits (142), Expect = 6e-25 Identities = 157/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 134504 CACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTC 134563 ||| | ||| || ||||||||||| || |||||||||||| || ||| ||| || Sbjct 1173539 CACCAAGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCTGCCGTCCTC 1173480 Query 134564 GAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTG 134623 |||||| |||||||| || |||| ||||||||| || ||||| || || || || || || Sbjct 1173479 GAGCTGCTTGCCTGCGAAGATCAGACGCTGCTGGTCAGGCGGAATTCCCTCCTTATCCTG 1173420 Query 134624 AATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTT 134683 ||| || ||||| || | ||||| || | || ||||| | ||| || || || Sbjct 1173419 AATCTTGGCCTTGACATTTTCGATGGTGTCAGAAGGCTCGACGTCCAAAGTGATCGTCTT 1173360 Query 134684 ACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 ||||| | || || |||||||| ||||||||| Sbjct 1173359 GCCGGTGAGCGTCTTCACGAAAATCTGCATTTTG 1173326 >seq14858 Length=1827956 Score = 123 bits (136), Expect = 3e-23 Identities = 167/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||| | || ||||| || | ||| || || || ||||| |||||||||||||| Sbjct 1580285 TTCCTCCGCGAAGACGCAAGACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAG 1580226 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | || | ||| || | ||| ||||| |||||||||| |||||||||||| || | Sbjct 1580225 ACAGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGG 1580166 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || ||||| || || || || ||| || || || | ||||| |||| || | Sbjct 1580165 GAATACCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCAA 1580106 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 | || || || ||||| || ||||| | ||| || || || || ||||||||| Sbjct 1580105 CATCAAGCGTGATGGTCTTTCCGGTAAGAGTCTTCACAAAGATCTGCATTTTG 1580053 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||| | || ||||| || | ||| || || || ||||| |||||||||||||| Sbjct 1580914 TTCCTCCGCGAAGACGCAAGACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAG 1580855 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | || | ||| || | ||| ||||| |||||||||| |||||||||||| || | Sbjct 1580854 ACAGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGG 1580795 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || ||||| || || || || ||| || || || | ||||| |||| || | Sbjct 1580794 GAATACCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCAA 1580735 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 | || || || ||||| || ||||| | ||| || || || || |||||| Sbjct 1580734 CATCAAGCGTGATGGTCTTTCCGGTAAGAGTCTTCACAAAGATCTGCATT 1580685 Score = 111 bits (122), Expect = 2e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || ||||| || | ||| || || || ||||| |||||||||||||| | || | Sbjct 1581131 AGACGCAAGACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGACAGAGTTCGG 1581072 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || | ||| ||||| |||||||||| |||||||||||| || || || ||||| Sbjct 1581071 CCGTCTTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCC 1581012 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || ||| || || || | ||||| |||| || || || || || Sbjct 1581011 TTGTCCTGGATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCAACATCAAGCGTG 1580952 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 ||||| || ||||| | ||| || || || || |||||| Sbjct 1580951 ATGGTCTTTCCGGTAAGAGTCTTCACAAAGATCTGCATT 1580913 Score = 107 bits (118), Expect = 2e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || ||||| || | ||| || || || ||||| |||||||||||||| | || | Sbjct 1581655 AGACGCAAGACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGACAGAGTTCGG 1581596 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || | ||| ||||| |||||||||| |||||||||||| || || || ||||| Sbjct 1581595 CCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCC 1581536 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || ||| || || || | ||||| |||| || || || || || Sbjct 1581535 TTGTCCTGGATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCAACATCAAGCGTG 1581476 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || || || ||||| | ||| || || || || |||||| Sbjct 1581475 ATAGTCTTTCCGGTAAGAGTCTTCACAAAGATCTGCATT 1581437 >seq14564 Length=527 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/189 (72%), Gaps = 5/189 (3%) Strand=Plus/Plus Query 104624 TGCCCGCGCCCAATCTGTCGCACATGCTTTACGGATTTATACCGATTTGCGGTGGCGACG 104683 |||| |||| || ||| |||| |||| ||||| ||||| ||||| || || || || | Sbjct 328 TGCCGGCGCAAAACCTGACGCATTTGCTGTACGGGTTTATCCCGATCTGTGGCGGTGATG 387 Query 104684 GCATCAACGACGCTCT-AAAGACCGTTC-CGGGTAGTTTTGAAGCGTTGCAAAAATCGTG 104741 ||||||||||| ||| ||||| | || ||||| || | |||||||| || || Sbjct 388 GCATCAACGACAGTCTGAAAGA--GATCGAAGGTAGCTTCCAGGCGTTGCAGCGTTCCTG 445 Query 104742 CGCTGGACGGGAAAACTTCAAAGTGGCCATTCACGATCCGTGGGCGGCGGTGCAAAAACC 104801 | || || || |||| |||||| | || |||||||||| || ||| |||| ||| Sbjct 446 CCAGGGCCGTGAGGACTTTAAAGTGTCAATCCACGATCCGTTTGCCGCGTTGCAGAAA-G 504 Query 104802 GCAAAAAGG 104810 || |||||| Sbjct 505 GCCAAAAGG 513 >seq21 Length=852027 Score = 91.5 bits (100), Expect = 1e-13 Identities = 110/147 (75%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 8248 CAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGCAACGCCAAAAGCAAT 8307 |||| ||| || || | |||||||||||||||||||||||||||||| || ||||| Sbjct 417825 CAAATCGAGACGGGCACGCCGTACATGCTGTACAAAGACGCTTGCAATCGGAAGAGCAAC 417884 Query 8308 CAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAAATTGTACAGTACAGC 8367 || | ||| |||| || || |||||||| ||||| | ||| | || |||||| | Sbjct 417885 CAGAAGAACTTGGGAACTATCAAATGCAGCAACTTGTGCACAGAAGTCGTCGAGTACA-C 417943 Query 8368 GCGC-CCGACGAAGTGGCCGTTTGCAA 8393 | || ||||| ||||| || ||||| Sbjct 417944 GAGCAAAGACGAGGTGGCTGTCTGCAA 417970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505304515929720