Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_027339.1 Length=38389 Score E Sequences producing significant alignments: (Bits) Value seq10212 91.5 4e-14 >seq10212 Length=656 Score = 91.5 bits (100), Expect = 4e-14 Identities = 345/535 (64%), Gaps = 20/535 (4%) Strand=Plus/Minus Query 21764 GCTGCATGTCTATTTGTTGCCATTCAAGGTTGATGATGTTCGAGCGTCTTAAGCCTGTTG 21823 ||||||| || ||||| ||| |||| | ||| ||||| ||||| | | ||| || | Sbjct 656 GCTGCATATCGATTTGCGACCAGGCAAGTTCGATAATGTTAGAGCGACGGAGGCCAGTGG 597 Query 21824 CCAGTGCAAATTCAACAACAGACTTTAATGGCTCCGGACATTCATCAATCAGCCTTTGTG 21883 |||||||||||||| ||| || | || || || || ||||| | | | ||||| Sbjct 596 TTAGTGCAAATTCAACGGTAGATTTAAGAGGTTCTGGGCACTCATCTACTAAGCGTTGTG 537 Query 21884 CTTCATGAGGCTCCAGCCAGCGGATACGTTTATTCTTCGGTTGAGGCACTTTAATAATTG 21943 | | | || || ||||| || | || || || | || ||||| || || | || Sbjct 536 CCTGAGCGGGTTCGAGCCACCGAACTCGCTTGTTTCTTTCCTGCGGCACCTTGATCACTG 477 Query 21944 GTGCCTTATCCAGCATTTTCCATTCACGCTCTGCGGCTCTTAGCAGGGCCTTTATAAATG 22003 ||| ||| || | | ||||| || | || || || | | || ||||| || || | Sbjct 476 GTGACTTTTCTATCCACTTCCAATCCCTTTCCGCAGCCCGCATAAGAGCCTTCATCAAAG 417 Query 22004 AAAGATGCGTAGCCTT------CGTTGCAACGGACGCTGGTTTTGGCGTGTATTCTGGAA 22057 ||| ||| ||||||| |||| ||||| | | | |||| ||| | | | Sbjct 416 CAAGGTGCTTAGCCTTTGTTGAAGTTGAAACGGCCTCAGATTTTCGCG-----GCGGTAT 362 Query 22058 CAGGTTTCCCtttttttCTGCA-TGCTTCTGCCCTGAGTTTCCAGTTTTCCTCATGAC-G 22115 || | || ||| || || ||| || | | | || |||| ||||| || | Sbjct 361 CACAATGCC--TTTCTTAGCCATTGCATCAACACGCATTTGCCAGCGCTCCTC-TGCCTT 305 Query 22116 CCGGTTCGTCATTTTCTGC--ATTGCTGAATAAATTTTTGATTCAGTAATGTCTTTTAGT 22173 || || |||| | | || | ||| | || ||||||| || || || || || | | Sbjct 304 CCTATTGGTCA--TGCGGCTAACTGCGGTGTAGATTTTTGCCTCGGTTATATCCTTCAAT 247 Query 22174 TGCATTCCTGCGAAATGTTGAAGCCAGAATCCGATCCGGCTTTTGTCATCGTCCAGTGAT 22233 | || | ||||| ||||||||||| ||||||| ||||| | || |||||| Sbjct 246 AAAACCCCCTCAAAATGCATGAGCCAGAATCCAATCCGGCCCTTGTCTGCATCGAGTGAT 187 Query 22234 TTTTTATGTGCTTTCTCTTCGAGCCACCTGACACACGCTTCCTCAAACGTCATAT 22288 || || || ||||| ||||| | ||| | | || || || ||||| |||| || Sbjct 186 TTCTTGTGCGCTTTTTCTTCTAACCAGCGCAGGCAAGCCTCTTCAAATGTCACAT 132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122701542499982