Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq14564 132 4e-26 seq14858 98.7 8e-16 >seq14564 Length=527 Score = 132 bits (146), Expect = 4e-26 Identities = 272/398 (68%), Gaps = 6/398 (2%) Strand=Plus/Minus Query 50276 CCACGCGGACACTCCTTTTTGCGGCTTCTGTATGGCGGCCCAAGGGTCGTGTATGGACAC 50335 ||| |||| || || ||||| ||||| | ||||| | || ||||| || ||||| Sbjct 527 CCAGGCGGTAACGCCCTTTTGGCCTTTCTGCAACGCGGCAAACGGATCGTGGATTGACAC 468 Query 50336 TTTAAAATCTTCCCGTCCCGCACACGATCGCTGCAACGCCTCGAAACTGCCGGTGATGGT 50395 |||||| || || || ||| || || ||||||||||||| ||| || || ||| Sbjct 467 TTTAAAGTCCTCACGGCCCTGGCAGGAACGCTGCAACGCCTGGAAGCTACCTTCGATCTC 408 Query 50396 TTTGAGGCTGTCGTTGATACCGTCGCCGCCGCAAATGGGAATGAAACCGTACAACAGATG 50455 ||| || ||||||||||| || || ||||| || || || || || ||||||| || ||| Sbjct 407 TTTCAGACTGTCGTTGATGCCATCACCGCCACAGATCGGGATAAACCCGTACAGCAAATG 348 Query 50456 AGTTAAATTTGGCACAGGCACTTTGTCCGCTGGAAAGTTGCGACCGTATACTCCCCACTC 50515 || | ||| || | |||| || || | | || || || |||||||| ||||| || Sbjct 347 CGTCAGGTTTTGCGCCGGCAGCTTATCGACGGTGAAATTACGGCCGTATACGCCCCATTC 288 Query 50516 AACAAAGTATGCCGCCACGACTTTATCCGTGACACCTTCTTGCAATTTGTTGTTCTCTTG 50575 ||||| || | | || ||||| ||| || | ||| || | || |||| || Sbjct 287 CACAAAATAAGAGCCGACCACTTT-GCCG-GA-ATCTTGTTTATAAGGTTTATTCTTTTC 231 Query 50576 CCATA-CG--TACGGTAGCGGACTCAAATGGGCGCCGTCGGTATCGGCCACTATTACCGG 50632 | | | || | || || ||||||| |||||||||||||||||| | | Sbjct 230 CAACAGCGGTTCTTTTAAGGGTGCCAAATGGCTGCCGTCGGTATCGGCCACAACAATTTC 171 Query 50633 AGTGGGCGCGCTTGCCGAACAGCCGTCGGAGTTGCATA 50670 ||| | |||| || | ||||||||||| || |||| Sbjct 170 AGTCGCATCGCTGGCGGTACAGCCGTCGGCATTACATA 133 >seq14858 Length=1827956 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 |||||||| | ||||| ||||| || | || || || || ||||| |||||||| | Sbjct 1580283 CCTCCGCGAAGACGCAAGACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGAC 1580224 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || |||| || | ||| || || || |||| |||||||| ||||| || || Sbjct 1580223 AGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGA 1580164 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||| || || || |||||| |||| | || | ||||||| | ||||| Sbjct 1580163 ATACCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCAACA 1580104 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | || || || ||||| ||||||||||| ||||| Sbjct 1580103 TCAAGCGTGATGGTCTTTCCGGTAAGAGTCTTCACAAAGATCTGCAT 1580057 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 |||||||| | ||||| ||||| || | || || || || ||||| |||||||| | Sbjct 1580912 CCTCCGCGAAGACGCAAGACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGAC 1580853 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || |||| || | ||| || || || |||| |||||||| ||||| || || Sbjct 1580852 AGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGA 1580793 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||| || || || |||||| |||| | || | ||||||| | ||||| Sbjct 1580792 ATACCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCAACA 1580733 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | || || || ||||| ||||||||||| ||||| Sbjct 1580732 TCAAGCGTGATGGTCTTTCCGGTAAGAGTCTTCACAAAGATCTGCAT 1580686 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/226 (70%), Gaps = 1/226 (0%) Strand=Plus/Minus Query 27023 TCCGCGCAAC-CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCA 27081 |||||| || ||||| ||||| || | || || || || ||||| |||||||| || Sbjct 1581139 TCCGCGAAAGACGCAAGACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGACA 1581080 Query 27082 TGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCA 27141 | || ||||||| | ||| || || || |||| |||||||| ||||| || || | Sbjct 1581079 GAGTTCGGCCGTCTTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAA 1581020 Query 27142 CACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTT 27201 ||| || || || |||||| |||| | || | ||||||| | ||||| | Sbjct 1581019 TACCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCAACAT 1580960 Query 27202 CTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || | || || || ||||| ||||||||||| ||||| Sbjct 1580959 CAAGCGTGATGGTCTTTCCGGTAAGAGTCTTCACAAAGATCTGCAT 1580914 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 ||||| ||||| || | || || || || ||||| |||||||| || | || || Sbjct 1581652 CGCAAGACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGACAGAGTTCGGCCG 1581593 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 || || | ||| || || || |||| |||||||| ||||| || || | ||| || || Sbjct 1581592 TCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTG 1581533 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || |||||| |||| | || | ||||||| | ||||| || || || ||| Sbjct 1581532 TCCTGGATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCAACATCAAGCGTGATA 1581473 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || ||||| ||||||||||| ||||| Sbjct 1581472 GTCTTTCCGGTAAGAGTCTTCACAAAGATCTGCAT 1581438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424857436545432