Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq57 105 8e-18 seq21 98.7 1e-15 >seq57 Length=138120 Score = 105 bits (116), Expect = 8e-18 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 94819 TTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAG 94878 ||||| || || || || || ||||| ||| |||||||||||||| ||||| ||| Sbjct 25759 TTTGCATGCGTGGAAGGCATTCTCTTCAGTGGAAGCTTCTGCGCTATTTTCTGGCTGAAG 25700 Query 94879 AAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGA 94938 |||||||| | ||||| || ||| ||||| |||||| | || ||||| ||||||||| Sbjct 25699 AAGCGAGGCTTGATGCCGGGCCTCACTTTCTCGAACGAGTTGATTTCTCGCGACGAGGGA 25640 Query 94939 CTCCACCAAGAGTTTGCG 94956 || ||| ||| |||||| Sbjct 25639 CTGCACGCAGACTTTGCG 25622 >seq21 Length=852027 Score = 98.7 bits (108), Expect = 1e-15 Identities = 143/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 104894 GCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGT 104953 || |||||| || | |||| |||||| || || || |||||||| ||||||||||| || Sbjct 417810 GCGATTCTCCAGGCGCAAATCGAGACGGGCACGCCGTACATGCTGTACAAAGACGCTTGC 417869 Query 104954 AACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAA 105013 || | ||||| || || ||||| ||||| ||||| | ||| | || |||||| Sbjct 417870 AATCGGAAGAGCAACCAGAAGAACTTGGGAACTATCAAATGCAGCAACTTGTGCACAGAA 417929 Query 105014 ATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTC 105073 || | || | || |||||| ||| |||||| || ||| | || || || | || Sbjct 417930 GTCGTCGAGTACACGAGCAAAGACGAGGTGGCTGTCTGCAACTTGGCCTCCGTCTCGCTG 417989 Query 105074 CCCAAGTATGTGGATCCAGAGA 105095 ||||||| ||||| | |||| Sbjct 417990 CCCAAGTTCGTGGACCGCGAGA 418011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583152452015640