Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq2 212 2e-49 seq14858 159 1e-33 seq5539 134 4e-26 seq14857 125 2e-23 seq17 91.5 4e-13 >seq2 Length=4461408 Score = 212 bits (234), Expect = 2e-49 Identities = 926/1454 (64%), Gaps = 21/1454 (1%) Strand=Plus/Plus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 ||| | || || || | || || || |||||||| || | ||| ||| | || ||| | Sbjct 3484271 GCTGTGGGTATTGACCTTGGCACCACCTATTCTTGCGTAGGTGTGTGGAAGAACGATGCT 3484330 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 || ||||| || || || || || || ||||| || || || || ||||| || || ||| Sbjct 3484331 GTGGAAATCATCGCGAACGACCAGGGAAACAGGACGACCCCGTCCTACGTCGCGTTCACC 3484390 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || || ||| | | | |||||| |||| || || |||| || || || |||| Sbjct 3484391 GACACGGAGAGACTTGTCGGTGATGCTGCGAAGAACCAAGTCGCACGCAACCCGGAAAAC 3484450 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCT 349438 || |||| ||||| ||||| || || || | | ||| |||| || || || Sbjct 3484451 ACCATTTTCGATGCCAAGCGCCTAATCGGCCGCAAGTTTGATGACCCCTCGGTCCAGTCG 3484510 Query 349439 GATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAG 349498 || | || |||| || || | || | | || || || || | ||||| Sbjct 3484511 GACATGAAGCATTGGCCATTCAAGGTCATCGCTGGTCCGGGAGACAAGCCCCTCATTGAA 3484570 Query 349499 GTTGAATATAAAGGTGAACAAAAACAATTTTTACCC-GAAGAAATTTCATCAATGGTTTT 349557 || || | || || || || | || |||| ||||| |||| | ||||| || Sbjct 3484571 GTCACGTACCAGGGAGAG-AAGAAGACGTTCCACCCCGAAGAGGTTTCCGCCATGGTGTT 3484629 Query 349558 AGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTAT 349617 | |||||||||||||| || || || || | || | ||| | || || || || Sbjct 3484630 GGGCAAAATGAAGGAAATCGCGGAGGCTTACCTCGGCAAGGAAGTGAAGGAGGCCGTCAT 3484689 Query 349618 TACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCAT 349677 ||| || || || || || || ||| | |||||| || || || |||||||| | ||| Sbjct 3484690 TACCGTCCCCGCGTACTTCAACGATTCGCAGCGTCAGGCTACCAAGGATGCTGGTACCAT 3484749 Query 349678 TGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGG 349737 ||| || | | || || | || || || || || || || ||||| || || ||||| Sbjct 3484750 TGCCGGCCTCAGCGTCCTCCGTATTATCAACGAGCCTACAGCGGCAGCCATCGCCTATGG 3484809 Query 349738 GCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTAC 349797 || || || | | | | || | || | || || || || | ||||| ||||| Sbjct 3484810 TCTGGACAAGAAGGGCTGCGGTGAGATGAACGTCCTCATCTTCGACATGGGTGGCGGTAC 3484869 Query 349798 TTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGG 349857 ||| ||||| || || || ||| | ||||| || || |||||||| || || || ||||| Sbjct 3484870 TTTCGATGTGTCGCTGCTTACAATCGAAGACGGTATCTTTGAAGTCAAGGCCACCGCTGG 3484929 Query 349858 TGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTT--GTTAAA 349915 |||||| ||||||||||| |||||||| || || ||| | | | | || | || | Sbjct 3484930 TGATACCCATCTTGGTGGTGAAGATTTCGACAACCGTTTGG--TGGACTTCTGCGTCCAG 3484987 Query 349916 GAATTTAAGCGTCAAGCTAAAATTGATATTGGAGATAA--TCCTAGAGCAATG-----CG 349968 || || ||||| |||| || | ||| || | || | ||| || || Sbjct 3484988 GACTTCAAGCG-CAAG---AACCGCGGAAAGGACATCAGCACCAACAGCCGTGCCCTTCG 3485043 Query 349969 TCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTC 350028 ||| || | || ||| || || | ||| | | | || | || || | | Sbjct 3485044 TCGGCTGCGTACCCAGTGCGAGCGCACCAAGAGAACTCTCTCTAGCAGCACTCAGGCAAC 3485103 Query 350029 TATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCG 350088 || |||||||| |||||| || |||| || | || | ||||| | ||||| || Sbjct 3485104 CATCGAAATTGACTCTCTTTTCGAGGGCATTGACTACTCTGTGTCTATCTCCCGTGCGCG 3485163 Query 350089 GTTTGAAGAATTATGTATGGATCTTTTTAGAGCAA--CAATGGATCCTGTGGAAAAAGTA 350146 ||||| || | || ||||| || || |||| | || || || || || || Sbjct 3485164 TTTTGAGGAGCTTTGCATGGA-CTACTT-CCGCAACTCCTTGTTGCCCGTCGAGAAGGTC 3485221 Query 350147 TTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCT 350206 | || || | || ||| | | | ||||| || || |||||||| ||| Sbjct 3485222 CTCAAGGACTCTGGTATTGACAAGCGTTCGGTCAGCGAAGTTGTGTTGGTTGGTGGATCT 3485281 Query 350207 ACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCT 350266 || ||||| || || | || ||| | | |||| || || || || || || || | Sbjct 3485282 ACCCGTATCCCCAAGATCCAGCAGCTCATCACTGACTTCTTCAACGGAAAGGAGCCGTGC 3485341 Query 350267 AGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTA 350326 || || || || || ||||| || ||||| || ||||||||||| |||||| | || || Sbjct 3485342 AGGTCGATCAACCCTGATGAGGCCGTTGCGTACGGTGCTGCTGTCCAGGCAGCGATCTTG 3485401 Query 350327 TCTGGAAATAAGAGTTCTAAAATTGATGATCTATTACTACTAGATGTAACTCCACTTTCG 350386 ||| || || || || | | ||| | | || || ||||| | || || || Sbjct 3485402 AAGGGAGTTACCAGCTCCCAAGTGCAGGATTTGCTTCTTCTGGATGTTGCGCCCCTCTCT 3485461 Query 350387 CTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTA 350446 || || | || || |||||| || ||||| || ||| ||||| | || | Sbjct 3485462 CTCGGTCTGGAGACAGCTGGTGGTGTCATGACCAAGCTGATTGAGAGAAACACAACGATC 3485521 Query 350447 CCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATT 350506 || || || ||||| || || || | || | || || || ||||||| || ||| Sbjct 3485522 CCGACTAAGAAGTCTCAGACCTTCACAACGTACGCGGACAACCAGCCAGGAGTGCTGATT 3485581 Query 350507 CAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTTACC 350566 || || | |||||||| ||||| || ||||| || || || || |||| | Sbjct 3485582 CAGGTGTACGAAGGTGAGCGTGCGATGACCAAAGACAACAACCTCCTGGGCAAATTCCAC 3485641 Query 350567 CTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATATT 350626 | || || || || || | || || || || || |||||| |||| ||||| Sbjct 3485642 TTGGATGGTATCCCCCCCGCCCCCCGTGGTGTCCCCCAAATCGAAGTCACTTTTGATATC 3485701 Query 350627 GATTCAAATGGTAT 350640 || | || ||||| Sbjct 3485702 GACGCTAACGGTAT 3485715 >seq14858 Length=1827956 Score = 159 bits (176), Expect = 1e-33 Identities = 164/213 (77%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 ||| |||| || ||||| ||||| || ||||| || || ||||| | ||||| || ||| Sbjct 1581124 AGACCAAG-TGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGACAGAGTTCGGCCGTCT 1581066 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || | || || |||||||| || ||||| ||||||||||| ||||| ||||| || ||| Sbjct 1581065 TCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCC 1581006 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || ||||| || || | || || || ||||| ||||| || | ||| Sbjct 1581005 TGGATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCAACATCAAGCGTGATGGTC 1580946 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 |||||||| || || || ||||| ||||||||| Sbjct 1580945 TTTCCGGTAAGAGTCTTCACAAAGATCTGCATT 1580913 Score = 156 bits (172), Expect = 1e-32 Identities = 163/213 (77%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 ||| |||| || ||||| ||||| || ||||| || || ||||| | ||||| || || Sbjct 1580267 AGACCAAG-TGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGACAGAGTTCGGCCGTCC 1580209 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || | || || |||||||| || ||||| ||||||||||| ||||| ||||| || ||| Sbjct 1580208 TCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCC 1580149 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || ||||| || || | || || || ||||| ||||| || | ||| Sbjct 1580148 TGGATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCAACATCAAGCGTGATGGTC 1580089 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 |||||||| || || || ||||| ||||||||| Sbjct 1580088 TTTCCGGTAAGAGTCTTCACAAAGATCTGCATT 1580056 Score = 156 bits (172), Expect = 1e-32 Identities = 163/213 (77%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 ||| |||| || ||||| ||||| || ||||| || || ||||| | ||||| || || Sbjct 1580896 AGACCAAG-TGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGACAGAGTTCGGCCGTCC 1580838 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || | || || |||||||| || ||||| ||||||||||| ||||| ||||| || ||| Sbjct 1580837 TCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCC 1580778 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || ||||| || || | || || || ||||| ||||| || | ||| Sbjct 1580777 TGGATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCAACATCAAGCGTGATGGTC 1580718 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 |||||||| || || || ||||| ||||||||| Sbjct 1580717 TTTCCGGTAAGAGTCTTCACAAAGATCTGCATT 1580685 Score = 156 bits (172), Expect = 1e-32 Identities = 163/213 (77%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 ||| |||| || ||||| ||||| || ||||| || || ||||| | ||||| || || Sbjct 1581648 AGACCAAG-TGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGACAGAGTTCGGCCGTCC 1581590 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || | || || |||||||| || ||||| ||||||||||| ||||| ||||| || ||| Sbjct 1581589 TCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCC 1581530 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || ||||| || || | || || || ||||| ||||| || | ||| Sbjct 1581529 TGGATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCAACATCAAGCGTGATAGTC 1581470 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 |||||||| || || || ||||| ||||||||| Sbjct 1581469 TTTCCGGTAAGAGTCTTCACAAAGATCTGCATT 1581437 Score = 102 bits (112), Expect = 2e-16 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 140613 CGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATC 140672 || ||||||||||| ||||| ||||| || ||||| || || || || ||||| || || Sbjct 1580409 CGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATG 1580350 Query 140673 GAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATC 140732 | || || || ||||| ||||| || | ||||||||||| || || || ||||| ||| Sbjct 1580349 GTGTCTGACGGCTCAACATCAAGCGTGATGGTCTTTCCGGTAAGAGTCTTCACAAAGATC 1580290 Query 140733 TGCATT 140738 |||||| Sbjct 1580289 TGCATT 1580284 >seq5539 Length=1094 Score = 134 bits (148), Expect = 4e-26 Identities = 235/342 (69%), Gaps = 0/342 (0%) Strand=Plus/Plus Query 130661 CATACCATAGAACACTTTATAATTTTCACCATTTTCTTCAACAACTTCCCCAGCACATTC 130720 ||| || ||||||| | | || ||||| |||||||| || || ||| | || || Sbjct 400 CATGCCGTAGAACAGCATGAATTTCTCACCGTTTTCTTCCACCACGGTCCCTTCGCACTC 459 Query 130721 ATCATGTGCAGCTAACATTCCTCCAAGCATAACAAAATCAGCTCCTGCTCCAAATGCTTT 130780 ||||| | || ||||| || || | ||| ||||| || || || | || || ||||| Sbjct 460 GTCATGACCTGCCAACATGCCACCCAACATGACAAAGTCCGCACCGCCACCGAAGGCTTT 519 Query 130781 CGCAATATCCCCGGGAGATTTACAACCCCCATCAGCAATAACATGTCCATTTAATCCATG 130840 ||||| ||| || || | |||||| || || | || || ||| | ||||| Sbjct 520 CGCAACATCACCTGGTACTGAACAACCGCCGTCGCTGACAATCTGACCACCAAGGCCATG 579 Query 130841 TGCCGCATCAGCACACTCTGAAATAGCAGAAAGTTGTGGATATCCAACTCCAGTTACTTT 130900 ||||||||| |||||||| | ||||| | || ||||| ||||| |||||| Sbjct 580 TGCCGCATCTGCACACTCGATCACTGCAGACAACTGCGGATAACCAACGCCAGTTTTCAC 639 Query 130901 TCTTGTAGTACAAACAGCACCTGGACCAATACCAATTTTAACAATATCAGCTCCTGCTAA 130960 || || || ||||| | || || |||||||| | |||||| |||||||| || | | Sbjct 640 TCGGGTGGTGCAAACCGAGCCAGGGCCAATACCGACTTTAACGATATCAGCACCAGACAG 699 Query 130961 AATTAGTGCTTCGGTCATTTCTCTAGTAGCCACATTACCTGC 131002 || ||| |||| |||||| | ||| | |||||||| || Sbjct 700 GATCAGTTCTTCAACCATTTCGCCAGTGACGACATTACCGGC 741 >seq14857 Length=2032611 Score = 125 bits (138), Expect = 2e-23 Identities = 154/209 (74%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| || ||||| || || || || || || || || || | |||| || || || | Sbjct 1173536 CAAG-TGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCTGCCGTCCTCGA 1173478 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 | || || || || ||||| ||||| ||||| ||||| |||||||| || |||||||||| Sbjct 1173477 GCTGCTTGCCTGCGAAGATCAGACGCTGCTGGTCAGGCGGAATTCCCTCCTTATCCTGAA 1173418 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 | || || || ||||| || || | ||||| || || || || | || | ||||| | Sbjct 1173417 TCTTGGCCTTGACATTTTCGATGGTGTCAGAAGGCTCGACGTCCAAAGTGATCGTCTTGC 1173358 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCATT 140738 |||| || || || || |||||||||||| Sbjct 1173357 CGGTGAGCGTCTTCACGAAAATCTGCATT 1173329 >seq17 Length=1139684 Score = 91.5 bits (100), Expect = 4e-13 Identities = 74/86 (86%), Gaps = 3/86 (3%) Strand=Plus/Plus Query 423764 GAGCATGGATGCCCGAGTGGTCTAAGGGGGCAGACTTAAGATCTGCTGG-CGAAAG-CCT 423821 ||||| ||||||||||||||| |||||||| ||||||||||| |||| | || | || Sbjct 930495 GAGCACGGATGCCCGAGTGGT-TAAGGGGGTGGACTTAAGATCCCCTGGTCTAACGACCG 930553 Query 423822 CGTGGGTTCAAACCCCACTCCGTGCA 423847 ||||||||| |||||||||||||||| Sbjct 930554 CGTGGGTTCGAACCCCACTCCGTGCA 930579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514965885618383