Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq21 147 2e-30 seq57 122 1e-22 >seq21 Length=852027 Score = 147 bits (162), Expect = 2e-30 Identities = 406/614 (66%), Gaps = 40/614 (7%) Strand=Plus/Minus Query 78762 GGCGAGTTCGCAT---GACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTT 78818 |||||| ||||| | |||||| || ||| ||| | | |||||||||| | Sbjct 418280 GGCGAGCTCGCAACTGGCCTCGAGA---GCGGCGAAGTAGATACACTCGAAGATGTTTCT 418224 Query 78819 GTTGAGCTCGCGCGCCTTGGTCTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGC 78878 ||| | |||| || | || |||||||| | || || | ||||||| | || || Sbjct 418223 GTTCAAGACGCGAGCTTCGGGGCTGTCGAACGGATAGCGAAGAAGCATGAAGGCGTCTGC 418164 Query 78879 CAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTC 78938 || |||||||| || | | ||| |||||||| |||| ||||||||| ||| || Sbjct 418163 GAGACCCTGGACTCCCAAACCGACAGGTCGGTGTCGCAAGTTGCTCTTCTT---CGCTTC 418107 Query 78939 GGTC---GGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACC----C 78991 || | ||||| |||| |||||||| |||||||||| ||| | ||| | ||| | Sbjct 418106 GGGCACAGGGTAGTAGTTTCGATCGATCACGCGGTTCAAGTTTCTCGTCATGACTTTGAC 418047 Query 78992 GAGTCACCTCGTACAATTTGGCGAAATCAAAAT----GATTTCCT--TTGATGAAAGTCG 79045 || || | || || | |||| || ||| | | || | | ||| | | Sbjct 418046 GATTCGCTTC----AAGTGTTCGAAGTCGAAAGTCCGGCTCTCGCGGTCCACGAACTTGG 417991 Query 79046 GTAGGCACAGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGA 79105 | || | | || |||| |||||| || ||| |||||| ||| | ||||| || Sbjct 417990 GCAGCGAGACGGAGGCCAAGTTGCAGACAGCCACCTCGTCTTTGCTCGTGTACTCGACGA 417931 Query 79106 TTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGT 79165 |||||||||||| || | ||||| || || | ||||||||||||||||||| | Sbjct 417930 CTTCTGTGCACAAGTTGCTGCATTTGATAGTTCCCAAGTTCTTCTGGTTGCTCTTCCGAT 417871 Query 79166 TACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGC 79225 | || ||||| ||||| |||||||||||| || ||||| | || || ||||| Sbjct 417870 TGCAAGCGTCTTTGTACAGCATGTACGGCGTGCCCGTCTCGATTTGCGCCTGGAGAATCG 417811 Query 79226 CGTCCCAGATGTCCCGGGCCCGGACAACCTTCTTGTACCGACCCTG---TGCGACGTACG 79282 | ||| | || | | || | || | |||| ||||||| | | || ||| || Sbjct 417810 CAAACCAAAGGTGCTGAGCTGG---AATCGTCTT---CCGACCCCGACCTTCG-CGTTCG 417758 Query 79283 T----CCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCG 79338 | | ||||||||| ||||| | || || | || || | || |||||||||||| Sbjct 417757 TAGCGCTCGTACAACTCTTTGAATTCGTCGCCCCACACCTCCGTCAAACCCGGGCACTCG 417698 Query 79339 TGCGGGCACATCAG 79352 | || |||||||| Sbjct 417697 TTGGGACACATCAG 417684 Score = 129 bits (142), Expect = 6e-25 Identities = 244/356 (69%), Gaps = 6/356 (2%) Strand=Plus/Minus Query 79381 TCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCG 79440 ||||||||||| || |||||||| ||||| |||||||||||| ||| |||||| Sbjct 417308 TCCATGAAGAGATCTGGGATCCAGAGGGCACAGAAGAGGTCGCGAGCACGTCGCTCCTCC 417249 Query 79441 TCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGA 79500 | ||| |||||| | ||||| || || | || || |||||| ||||||| Sbjct 417248 TTGCCGTGGTTCTTTTTGATGTCGAGGAAATCGAAGACATCAAAGTGCCATGGCTCCAAG 417189 Query 79501 TAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTG 79560 || ||||||| || ||||| |||||||||||||||| |||||| || || | | | Sbjct 417188 TAAATGGCGAGGCTGCCTTTGCGTTTGCCGCCGCCCTGGTCGACGTAGCGCGCGGCATCG 417129 Query 79561 TTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGT 79620 ||||| |||| |||||| || | | || | | | ||| ||||| || ||| || Sbjct 417128 TTGAAGACTCTGAGCATCGGGAGAAGACCATTCGAGTAGCCATTCGTTCCTCGGAT--GT 417071 Query 79621 GTACCGCTC---GCCCGAATGTTCGAGCAGTGGATTCCGATGCCCCCGGACCACTTGGAG 79677 || | || || ||||||| | | || |||| ||||||| |||||| Sbjct 417070 -AACTGTTCGTGGCTCGAATGTCTGTCACGGCGAGACCGAGACCCCCGGCTGTCTTGGAA 417012 Query 79678 ATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCAT 79733 || |||||||| ||| | ||| | | || || ||||||||||| || | ||| Sbjct 417011 ATCAACGCGCACTGCTTTAACGTGCTGAAAATCCCATCGATCGAGTCCTCTTGCAT 416956 Score = 125 bits (138), Expect = 8e-24 Identities = 149/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 19422 TCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGCGGCAAAC 19481 |||| |||||| | ||||||||| | | || | |||||| ||||||| |||||||||| Sbjct 417107 TCCCGATGCTCAGAGTCTTCAACGATGCCGCGCGCTACGTCGACCAGGGCGGCGGCAAAC 417166 Query 19482 GCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTCCTCG 19541 |||| ||| ||||||| ||| | |||||||||||| || ||| | |||||||||| Sbjct 417167 GCAAAGGCAGCCTCGCCATTTACTTGGAGCCATGGCACTTTGATGTCTTCGATTTCCTCG 417226 Query 19542 AACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCACGGCCTTGT 19601 | | |||||| || | |||||| || ||||||||||||| ||| | | Sbjct 417227 ACATCAAAAAGAACCACGGCAAGGAGGAGCGACGTGCTCGCGACCTCTTCTGTGCCCTCT 417286 Query 19602 GGATTCCGGACCTATTCATGGA 19623 |||| || || || |||||||| Sbjct 417287 GGATCCCAGATCTCTTCATGGA 417308 Score = 93.3 bits (102), Expect = 5e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 19103 CCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTC 19162 || ||| || | ||||| |||||||| |||||| ||| | | || | | || Sbjct 416505 CCCCAGCACATGCTCATGAGAGTCGCGTGCGGCATTCATTGTGGGGATGTGGAGAAAGCG 416564 Query 19163 CGCGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTC 19222 ||| || ||||| |||||||| ||||||||||||||||| || ||||| ||||| ||| Sbjct 416565 ATCGAAACCTACGAACTGATGAGTCAGAAGTTCTTCACGCATGCAACGCCCACCCTGTTC 416624 Query 19223 AACGCCGGTACGAACAACCCGCAGATGTCGAGCTGT 19258 |||||||| || | |||||| ||| |||||| Sbjct 416625 AACGCCGGCACCCCCCGCCCGCAAATGAGCAGCTGT 416660 >seq57 Length=138120 Score = 122 bits (134), Expect = 1e-22 Identities = 102/125 (82%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 59994 tttGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAA 60053 ||||||||||||||||| || ||||| ||| ||||| |||||||||||||| || Sbjct 25759 TTTGCATGCGTGGAAGGCATTCTCTTCAGTGGAAGCTTCTGCGCTATTTTCTGGCTGAAG 25700 Query 60054 AAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGC 60113 ||||| ||| | ||||||||||| | |||||| |||||| ||||||| || |||||||| Sbjct 25699 AAGCGAGGCTTGATGCCGGGCCTCACTTTCTCGAACGAGTTGATTTCTCGCGACGAGGGA 25640 Query 60114 CTCCA 60118 || || Sbjct 25639 CTGCA 25635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548422904661840