Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq9075 95.1 1e-14 seq6 89.7 6e-13 >seq9075 Length=545 Score = 95.1 bits (104), Expect = 1e-14 Identities = 122/164 (74%), Gaps = 6/164 (4%) Strand=Plus/Plus Query 159121 GTGATCTTGCGCGTCAC-AAACTCTGCTCCGCGCCGTTCCG--ACTCATGGTTAAACAGA 159177 ||||||||||||||||| || ||| | ||||| | || | ||||||||| ||||| Sbjct 23 GTGATCTTGCGCGTCACGAAGGTCT-CGCCGCG--GATCGGGCTCTCATGGTTGAACAGG 79 Query 159178 ATGCCGGTACAAGCGAACAGGTTATAGGACTCGCGGTAATTTTTAGTTATCCAGTATCCA 159237 |||||| | | ||||||| | |||| ||||||||| || || |||||||| || Sbjct 80 ATGCCGTTGCTGGCGAACATGCCGTAGGCCTCGCGGTAGTTCACCGTGATCCAGTAGCCG 139 Query 159238 AAGAGCTTGGAGACGCCGTATGGACTCCGAGGATAAAATGGTGT 159281 | ||||||| ||||||||| || || |||||||| || || Sbjct 140 TACAGCTTGGCGACGCCGTAGGGCGAACGCGGATAAAACGGCGT 183 Score = 82.4 bits (90), Expect = 8e-11 Identities = 127/178 (71%), Gaps = 10/178 (6%) Strand=Plus/Plus Query 124671 GTAATCTTGCGCGTCACAAA---CTCGGAACCGCGTCGCTCAGACTCG--TGGTTGAACA 124725 || |||||||||||||| || |||| ||||| | || | ||| |||||||||| Sbjct 23 GTGATCTTGCGCGTCACGAAGGTCTCG---CCGCG--GATCGGGCTCTCATGGTTGAACA 77 Query 124726 GAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATACC 124785 | ||||| | | || ||||| ||||| | |||||||||||| ||| ||||| || | Sbjct 78 GGATGCCGTTGCTGGCGAACATGCCGTAGGCCTCGCGGTAGTTCACCGTGATCCAGTAGC 137 Query 124786 CAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTCATTTTG 124843 | | ||||||| ||||| ||||| || || || || || ||| | || || || Sbjct 138 CGTACAGCTTGGCGACGCCGTAGGGCGAACGCGGATAAAACGGCGTGGTCTCCTTCTG 195 >seq6 Length=2024119 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 80161 TGCTCCCGGTGAGGATTGAACTCACGACTTTTGGCACATAAGACCAACACTCTAACCATC 80220 ||||||||||| |||| |||| ||||||||| ||| ||||||||| || ||||||||| | Sbjct 535153 TGCTCCCGGTGGGGATCGAACCCACGACTTTCGGCTCATAAGACCGACGCTCTAACCAAC 535094 Query 80221 TGAGTTACGAGAGC 80234 |||| |||| |||| Sbjct 535093 TGAGCTACGGGAGC 535080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547114347787800