Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq14858 181 1e-40 seq14857 165 9e-36 seq57 109 6e-19 seq9075 107 2e-18 seq21 87.8 2e-12 >seq14858 Length=1827956 Score = 181 bits (200), Expect = 1e-40 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| ||||| |||||||| |||||||| || ||||| |||||| | Sbjct 1581437 AATGCAGATCTTTGTGAAGACTCTTACCGGAAAGACTATCACGCTTGATGTTGAGCCGTC 1581496 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | ||| ||||||| || || ||||||||||| || ||||| || || || Sbjct 1581497 AGACACCATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGTATTCCCCCTGATCA 1581556 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| ||||||||||| ||||| | ||||| | || || || | ||||| || Sbjct 1581557 GCAGCGTCTGATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGAACTCTGTCTGACTACAA 1581616 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || ||||| || | |||||||||||||| ||||| Sbjct 1581617 CATTCAGAAGGAGTCGACTCTCCACTTGGTCTTGCGTCTTCGTGGTGG 1581664 Score = 179 bits (198), Expect = 4e-40 Identities = 177/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| ||||| |||||||| ||||| || || ||||| |||||| | Sbjct 1580056 AATGCAGATCTTTGTGAAGACTCTTACCGGAAAGACCATCACGCTTGATGTTGAGCCGTC 1580115 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | ||| ||||||| || || ||||||||||| || ||||| || || || Sbjct 1580116 AGACACCATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGTATTCCCCCTGATCA 1580175 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| ||||||||||| ||||| | ||||| | || || || | ||||| || Sbjct 1580176 GCAGCGTCTGATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGAACTCTGTCTGACTACAA 1580235 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | || ||||| || ||||| || | ||||||||||||||||| ||| Sbjct 1580236 CATTCAGAAGGAGTCGACTCTCCACTTGGTCTTGCGTCTTCGCGGAGGA 1580284 Score = 179 bits (198), Expect = 4e-40 Identities = 177/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| ||||| |||||||| ||||| || || ||||| |||||| | Sbjct 1580685 AATGCAGATCTTTGTGAAGACTCTTACCGGAAAGACCATCACGCTTGATGTTGAGCCGTC 1580744 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | ||| ||||||| || || ||||||||||| || ||||| || || || Sbjct 1580745 AGACACCATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGTATTCCCCCTGATCA 1580804 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| ||||||||||| ||||| | ||||| | || || || | ||||| || Sbjct 1580805 GCAGCGTCTGATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGAACTCTGTCTGACTACAA 1580864 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | || ||||| || ||||| || | ||||||||||||||||| ||| Sbjct 1580865 CATTCAGAAGGAGTCGACTCTCCACTTGGTCTTGCGTCTTCGCGGAGGA 1580913 Score = 165 bits (182), Expect = 9e-36 Identities = 173/226 (77%), Gaps = 1/226 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| ||||| |||||||| ||||| || || ||||| |||||| | Sbjct 1580913 AATGCAGATCTTTGTGAAGACTCTTACCGGAAAGACCATCACGCTTGATGTTGAGCCGTC 1580972 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | ||| ||||||| || || ||||||||||| || ||||| || || || Sbjct 1580973 AGACACCATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGTATTCCCCCTGATCA 1581032 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| ||||||||||| ||||| | || || | || || || | ||||| || Sbjct 1581033 GCAGCGTCTGATTTTTGCTGGCAAGCAGTTGGAAGACGGCCGAACTCTGTCTGACTACAA 1581092 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTC-TTCGCGG 27629 | || ||||| || ||||| || | |||||||||| ||||||| Sbjct 1581093 CATTCAGAAGGAGTCGACTCTCCACTTGGTCTTGCGTCTTTCGCGG 1581138 Score = 105 bits (116), Expect = 8e-18 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| ||||| |||||||| ||||| || || ||||| |||||| | Sbjct 1580284 AATGCAGATCTTTGTGAAGACTCTTACCGGAAAGACCATCACGCTTGATGTTGAGCCGTC 1580343 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | ||| ||||||| || || ||||||||||| || ||||| || || || Sbjct 1580344 AGACACCATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGTATTCCCCCTGATCA 1580403 Query 27525 GCAGCG 27530 |||||| Sbjct 1580404 GCAGCG 1580409 >seq14857 Length=2032611 Score = 165 bits (182), Expect = 9e-36 Identities = 159/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || || |||||||| ||||||||||| || ||| | || || ||| | Sbjct 1173329 AATGCAGATTTTCGTGAAGACGCTCACCGGCAAGACGATCACTTTGGACGTCGAGCCTTC 1173388 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||| | |||| | ||||| || |||||||| |||||||||||||| || ||||| Sbjct 1173389 TGACACCATCGAAAATGTCAAGGCCAAGATTCAGGATAAGGAGGGAATTCCGCCTGACCA 1173448 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| || || || || ||||| |||||||| | | ||||| | ||||| || Sbjct 1173449 GCAGCGTCTGATCTTCGCAGGCAAGCAGCTCGAGGACGGCAGAACCCTTTCCGACTACAA 1173508 Query 27585 TGTCCAAAAGGAATCCACTCTTCA 27608 |||| |||||||||||||| || Sbjct 1173509 CATCCAGAAGGAATCCACTCTCCA 1173532 >seq57 Length=138120 Score = 109 bits (120), Expect = 6e-19 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 64729 TTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAA 64788 ||||| || |||||||| ||| |||| ||| ||||| ||||||||||||| || Sbjct 25759 TTTGCATGCGTGGAAGGCATTCTCTTCAGTGGAAGCTTCTGCGCTATTTTCTGGCTGAAG 25700 Query 64789 AAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGGG 64848 ||||| ||| ||||||| || || | || ||||||||| |||| ||||| |||||||| Sbjct 25699 AAGCGAGGCTTGATGCCGGGCCTCACTTTCTCGAACGAGTTGATTTCTCGCGACGAGGGA 25640 Query 64849 CTCCACCAAGAATTTGCG 64866 || ||| ||| |||||| Sbjct 25639 CTGCACGCAGACTTTGCG 25622 >seq9075 Length=545 Score = 107 bits (118), Expect = 2e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 24759 GTGCAGGAGACGCCACAGTCGGAGACCACTCCATTTTATCCGCGAAGCCCGTATGGGGTC 24818 ||||||||| ||| ||| ||||||||| || ||||||||||| || || || ||| Sbjct 210 GTGCAGGAGGTGCCGCAGAAGGAGACCACGCCGTTTTATCCGCGTTCGCCCTACGGCGTC 151 Query 24819 TCAAAGGTGTTCGCGTACTGGATAACCAAGAACTACCGTGAGGCCCATGGGATATATGCA 24878 | ||| ||| || |||||||| || ||||||||| |||||| | || || | || Sbjct 150 GCCAAGCTGTACGGCTACTGGATCACGGTGAACTACCGCGAGGCCTACGGCATGTTCGCC 91 Query 24879 TGCAACGGAATTCTGTTCAACCATGAG 24905 ||||||| || ||||||||||||||| Sbjct 90 AGCAACGGCATCCTGTTCAACCATGAG 64 >seq21 Length=852027 Score = 87.8 bits (96), Expect = 2e-12 Identities = 129/181 (71%), Gaps = 4/181 (2%) Strand=Plus/Minus Query 80907 GGACGCCAGATTGCACACGGCCACCTCTTCA--GCATCTGTAAACTCGACGATTTCCGTG 80964 ||| |||| ||||| || |||||||| || || |||| |||||||| ||| ||| Sbjct 417980 GGAGGCCAAGTTGCAGACAGCCACCTCGTCTTTGCTCGTGTA--CTCGACGACTTCTGTG 417923 Query 80965 CACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCG 81024 ||||| || | || || || |||| ||| |||||||| ||| ||||||||| Sbjct 417922 CACAAGTTGCTGCATTTGATAGTTCCCAAGTTCTTCTGGTTGCTCTTCCGATTGCAAGCG 417863 Query 81025 TCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAA 81084 || ||||| ||||||||| || || ||||||| || | || ||| || || |||| Sbjct 417862 TCTTTGTACAGCATGTACGGCGTGCCCGTCTCGATTTGCGCCTGGAGAATCGCAAACCAA 417803 Query 81085 A 81085 | Sbjct 417802 A 417802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570204457714320