Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq14858 149 5e-31 >seq14858 Length=1827956 Score = 149 bits (164), Expect = 5e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||||| ||||| ||| |||| || ||||| || || ||||| Sbjct 1581438 ATGCAGATCTTTGTGAAGACTCTTACCGGAAAGACTATCACGCTTGATGTTGAGCCGTCA 1581497 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || || ||| || || ||||| ||||| || || || ||||| Sbjct 1581498 GACACCATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGTATTCCCCCTGATCAG 1581557 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || ||||| || ||||| ||| | || | || || |||||| Sbjct 1581558 CAGCGTCTGATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGAACTCTGTCTGACTACAAC 1581617 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| ||||||||||| | || ||||| |||||| | || ||||| Sbjct 1581618 ATTCAGAAGGAGTCGACTCTCCACTTGGTCTTGCGTCTTCGTGGTGG 1581664 Score = 141 bits (156), Expect = 8e-29 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||||| ||||| ||| | || || ||||| || || ||||| Sbjct 1580914 ATGCAGATCTTTGTGAAGACTCTTACCGGAAAGACCATCACGCTTGATGTTGAGCCGTCA 1580973 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || || ||| || || ||||| ||||| || || || ||||| Sbjct 1580974 GACACCATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGTATTCCCCCTGATCAG 1581033 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || ||||| || ||||||||| | || | || || |||||| Sbjct 1581034 CAGCGTCTGATTTTTGCTGGCAAGCAGTTGGAAGACGGCCGAACTCTGTCTGACTACAAC 1581093 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGT 27203 ||||| ||||||||||| | || ||||| |||||| Sbjct 1581094 ATTCAGAAGGAGTCGACTCTCCACTTGGTCTTGCGT 1581129 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||||| ||||| ||| | || || ||||| || || ||||| Sbjct 1580057 ATGCAGATCTTTGTGAAGACTCTTACCGGAAAGACCATCACGCTTGATGTTGAGCCGTCA 1580116 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || || ||| || || ||||| ||||| || || || ||||| Sbjct 1580117 GACACCATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGTATTCCCCCTGATCAG 1580176 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || ||||| || ||||| ||| | || | || || |||||| Sbjct 1580177 CAGCGTCTGATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGAACTCTGTCTGACTACAAC 1580236 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||||||||||| | || ||||| |||||| | || || || || Sbjct 1580237 ATTCAGAAGGAGTCGACTCTCCACTTGGTCTTGCGTCTTCGCGGAGGAAT 1580286 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||||| ||||| ||| | || || ||||| || || ||||| Sbjct 1580686 ATGCAGATCTTTGTGAAGACTCTTACCGGAAAGACCATCACGCTTGATGTTGAGCCGTCA 1580745 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || || ||| || || ||||| ||||| || || || ||||| Sbjct 1580746 GACACCATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGTATTCCCCCTGATCAG 1580805 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || ||||| || ||||| ||| | || | || || |||||| Sbjct 1580806 CAGCGTCTGATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGAACTCTGTCTGACTACAAC 1580865 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||||||||||| | || ||||| |||||| | || || || || Sbjct 1580866 ATTCAGAAGGAGTCGACTCTCCACTTGGTCTTGCGTCTTCGCGGAGGAAT 1580915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434837608470720