Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_028672.1 Length=149732 Score E Sequences producing significant alignments: (Bits) Value seq2293 233 2e-56 >seq2293 Length=1342 Score = 233 bits (258), Expect = 2e-56 Identities = 279/376 (74%), Gaps = 2/376 (1%) Strand=Plus/Minus Query 24285 GATGTCGTCAAAGACGATCGACGGATCTGCCAGGATGTTACGGATGATATGGGTGTATGA 24344 ||| || ||||| ||||||| |||||| | ||| |||||||| |||||||| || || Sbjct 1080 GATATCATCAAATACGATCGCCGGATCGTTGACGATATTACGGATAATATGGGTATAAGA 1021 Query 24345 GCGAGAGTGGATAGTCTCACTGAACGCCCAAGTCTCTACCCATGTTTCCAGGGTTGTGTC 24404 || |||||||| ||||| ||| | ||| || || ||||| |||||||| | | Sbjct 1020 ACGGGAGTGGATGGTCTCGGAGAATGACCAGGTTTCCACCCAGGTTTCCAGTTCCGGGAT 961 Query 24405 GGACACGATCGGGAGCAGAACTGCGTTCGGCCCACGGCCCTGTACAGAATCCAGAAGGAT 24464 || | | ||| | || | ||||||| | |||||||| | ||||||| || | Sbjct 960 TGAGATCAGCGGCAACAAGGCCACGTTCGGGCTGCGGCCCTGAATCGAATCCAACAGCGT 901 Query 24465 CTGGTACTTCAGGTTGCTGATGAAGATGTGCTTCTCGTGATCCGGCAGATTCATG-TAGT 24523 |||||| ||||| ||||||||||| ||||| ||||| ||||||||||| | | || |||| Sbjct 900 CTGGTATTTCAGATTGCTGATGAAAATGTGTTTCTCATGATCCGGCAG-TGCCTGATAGT 842 Query 24524 CGATACGGTCACGGGTCACGTTAACTTCTTCCGGACGCCAGAAGAACGCCAGTTGCTTCT 24583 | |||||||| |||| |||| ||||||||| |||||||||||||| | ||| || |||| Sbjct 841 CAATACGGTCGCGGGAGACGTCAACTTCTTCAGGACGCCAGAAGAAAGACAGCTGTTTCT 782 Query 24584 CGATCAGCTTCTCGAACTTGGCGTGTTTCTGCTGGTCATAGCGAGAAACGTTCGGTGTCT 24643 | ||||| || ||||| | | ||||| ||||| || | || | |||||| | || Sbjct 781 CAATCAGTTTTTCGAAAATTTCATGTTTTTGCTGATCGAAACGCGCAACGTTAACCGACT 722 Query 24644 CGCCGAGGAACATCGG 24659 |||| |||||||| Sbjct 721 GACCGAAAAACATCGG 706 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 25322 CACGAGGTGGCTCAAAACCGTTCGTGGAGTTGGTAATCTGACTGGACGTCTCGCAAGGCA 25381 |||| |||||||||| ||||| |||| ||||| |||||| || || || |||||| Sbjct 215 CACGTGGTGGCTCAATGCCGTTGGTGGCGTTGGAAATCTGCGAAGAGGTTTCCGAAGGCA 156 Query 25382 TCATCGTGGACAGCGTAGAGTTACGCAGTCCATGAATAGCGATGTCGATACGCAGCTTTT 25441 ||| || ||||| || ||||||||||| || |||| || |||||| | ||| Sbjct 155 TCAGCGCTGACAGGGTGGAGTTACGCAGACCGGTTTCCACGATCTCTTTACGCAACGTTT 96 Query 25442 CCCAATCCATCTTCAGTTTCGCAGTGTGGAGGCCATCTACCTCTTTCTTGTAACGGTCGA 25501 |||| || | ||| | | | | | |||| | ||||||||||| ||||| Sbjct 95 CCCAGTCGTAGTGCAGAGGCTCCTGGCAAATGACATCCAAATCTTTCTTGTAGGTGTCGA 36 Query 25502 TCGGCAGAATGCCCTGAGAGTATGTGGTCTC 25532 | |||| || ||||| || || ||||| || Sbjct 35 TTGGCAAGATACCCTGCGAATAGGTGGTTTC 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478925417087520