Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_028683.1 Length=177643 Score E Sequences producing significant alignments: (Bits) Value seq2293 86.0 7e-12 >seq2293 Length=1342 Score = 86.0 bits (94), Expect = 7e-12 Identities = 132/186 (71%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 145743 TTACGCATGATATGTGTATAAGAACGGCTATGGATAGTCTCAGAGAACGTCCAAGTAGCA 145802 ||||| || ||||| |||||||||||| ||||| ||||| ||||| | ||| || | Sbjct 1043 TTACGGATAATATGGGTATAAGAACGGGAGTGGATGGTCTCGGAGAATGACCAGGTTTCC 984 Query 145803 ACCCATGTGTCTAATGCCGGATCGGAAATCAAAGCCATCAGGACCGC-TGCAGGCGCACG 145861 ||||| || || | | |||| || |||| | || || | || | | | ||| || Sbjct 983 ACCCAGGTTTCCAGTTCCGGGATTGAGATCAGCGGCAACAAGGCCACGTTCGGGC-TGCG 925 Query 145862 ACCTTGAATAGAATCCAACAGACTTTGGTATTTAAGATTAGAAATAAAGATGTCTTGCTG 145921 || ||||| ||||||||||| | |||||||| ||||| || || |||| || || Sbjct 924 GCCCTGAATCGAATCCAACAGCGTCTGGTATTTCAGATTGCTGATGAAAATGTGTTTCTC 865 Query 145922 GTGATC 145927 ||||| Sbjct 864 ATGATC 859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568224025672680