Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_028696.2 Length=41338 Score E Sequences producing significant alignments: (Bits) Value seq10212 279 1e-70 >seq10212 Length=656 Score = 279 bits (308), Expect = 1e-70 Identities = 435/616 (71%), Gaps = 16/616 (3%) Strand=Plus/Minus Query 21702 GATGATGTTAGACCGCCTAAGTCCCGTTGCCAGCGCAAATTTAACAACAGATTTCAACGG 21761 ||| |||||||| || | || || || | || ||||||| ||| |||||| | || Sbjct 625 GATAATGTTAGAGCGACGGAGGCCAGTGGTTAGTGCAAATTCAACGGTAGATTTAAGAGG 566 Query 21762 TTCCTGACATTCTTCAA-TAAGTCTTTTTGCCTCATCACGCTCAAGCCACCTCACGCGTT 21820 ||| | || || || | |||| | || ||||| | | | || ||||||| || || | Sbjct 565 TTCTGGGCACTCATCTACTAAG-CGTTGTGCCTGAGCGGGTTCGAGCCACCGAACTCGCT 507 Query 21821 TGTTTCTGACAGCAGGCACCTTGATTACAGGTGCTTTCTCCAGCCATTTCCAGTCACGTT 21880 ||||||| | ||||||||||| || |||| || || | ||| ||||| || | || Sbjct 506 TGTTTCTTTCCTGCGGCACCTTGATCACTGGTGACTTTTCTATCCACTTCCAATCCCTTT 447 Query 21881 CTGCTGCACGCAAAATCGCCTTCATTAATGCCAGATGTTTGGCCTTAGTGGAGGTTGTGA 21940 | || || |||| || |||||||| || || || || || ||||| || || |||| | Sbjct 446 CCGCAGCCCGCATAAGAGCCTTCATCAAAGCAAGGTGCTTAGCCTTTGTTGAAGTTGAAA 387 Query 21941 CCGGCTTGGGCTCAAATACTGGCGCTTCTTT-AC----CCTTTCTCTTGGCA--GATTCA 21993 | || |||| || | ||| | | || ||||||| | | || | ||| Sbjct 386 C------GGCCTCAGATTTTCGCGGCGGTATCACAATGCCTTTCT-TAGCCATTGCATCA 334 Query 21994 ACTTTCTGCTGCCATATCTCCTTTACCTTCCTGTTTTGCATCCTGCTCACCGCGGCGTAA 22053 || | ||||| ||||| | ||||||| || ||| | ||| || |||| ||| Sbjct 333 ACACGCATTTGCCAGCGCTCCTCTGCCTTCCTATTGGTCATGCGGCTAACTGCGGTGTAG 274 Query 22054 ATCTTCGCCTCAGTGATATCCTTTATCCTTACTCCTTCGAAATGCTCAATCCAGAATCCC 22113 || || ||||| || |||||||| | || || || |||||| | ||||||||| Sbjct 273 ATTTTTGCCTCGGTTATATCCTTCAATAAAACCCCCTCAAAATGCATGAGCCAGAATCCA 214 Query 22114 ATCCGGCCTTTATCGGTATCGAGCGATTTCTTGTCTGCTTTCTCTTCCAGCCAGCGGAGG 22173 |||||||| || || | |||||| |||||||||| ||||| ||||| | |||||| ||| Sbjct 213 ATCCGGCCCTTGTCTGCATCGAGTGATTTCTTGTGCGCTTTTTCTTCTAACCAGCGCAGG 154 Query 22174 CATGCTTCTTCAAAAGTCACTTCAGGAAAGTCGCCTAGCCTGTCTACTCGCCAGAGTTCA 22233 || || |||||||| ||||| | || ||||| || | | |||| || ||| |||||| Sbjct 153 CAAGCCTCTTCAAATGTCACATTCGGGAAGTCCCCCAAACGCTCTATTCTCCAAAGTTCA 94 Query 22234 GCCTTTCTTTTGTCGTGCAACTCCTGAGCTTGCCGCTTTCCCGCTGTCCCAAGAGATTCC 22293 || ||||| |||||||| |||||| ||||| || | ||| |||||||| |||||| Sbjct 93 GCTTTTCTACGGTCGTGCAGCTCCTGCGCTTGGCGTCTGTCCGAAGTCCCAAGCGATTCC 34 Query 22294 TTAATTCGCTTCCCGC 22309 ||||||||||| |||| Sbjct 33 TTAATTCGCTTGCCGC 18 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132136677146600