Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_028773.1 Length=182145 Score E Sequences producing significant alignments: (Bits) Value seq2293 122 1e-22 >seq2293 Length=1342 Score = 122 bits (134), Expect = 1e-22 Identities = 267/397 (67%), Gaps = 10/397 (3%) Strand=Plus/Plus Query 20022 AATCACTTAATGCAACCTATGTTTTTCGGTGATGAACCTGGTA---TTGCGCGTTACGAT 20078 || || ||| || |||| |||||||||||| | | | || ||||||||| |||| Sbjct 691 AACCAGTTACTGGAACCGATGTTTTTCGGTCAGT---CGGTTAACGTTGCGCGTTTCGAT 747 Query 20079 ACCCAGAAACATGAAATGTTCGAAAACTTAATTGAAAAGCAGTTGAGTTTCTTCTGGCGT 20138 || ||||||||||| |||||||| | ||||| || ||| || ||||||||||||| Sbjct 748 CAGCAAAAACATGAAATTTTCGAAAAACTGATTGAGAAACAGCTGTCTTTCTTCTGGCGT 807 Query 20139 CCTGAAGAGGTTGACGTAACTCGTGATAAGATCGATTATGATAATTTACCAGAACATGAA 20198 |||||||| |||||||| | || || || || ||| | | || || ||||| Sbjct 808 CCTGAAGAAGTTGACGTCTCCCGCGACCGTATTGACTATCAGGCACTGCCGGATCATGAG 867 Query 20199 AAACATATCTTTACTTCCAATTTGAAGTATCAGAGCTTACTCGATACCGTTCAGGGACGT 20258 ||||| || || | |||| |||| || |||| | | ||| | ||||||| || Sbjct 868 AAACACATTTTCATCAGCAATCTGAAATACCAGACGCTGTTGGATTCGATTCAGGGCCGC 927 Query 20259 GCTCCTAACACTGCTTTTATGTCCATCGTATC--TGATGTAACACTTGACACATGGATTC 20316 || ||| || || || | | | || | | | ||| || || ||| | Sbjct 928 AGCCCGAACGTGGCCTTGTTGCCGCTGATCTCAATCCCGGA--ACTGGAAACCTGGGTGG 985 Query 20317 CTACCTGGGCGTTCTCGGAGACAATCCACAGTCGTTCTTATACACACATTATGCGCAACG 20376 |||||| | ||||| ||||| |||||| ||||||||||| || ||||| || || Sbjct 986 AAACCTGGTCATTCTCCGAGACCATCCACTCCCGTTCTTATACCCATATTATCCGTAATA 1045 Query 20377 TGTACGAAGATCCGTCCAAGATCTTTGACGAAATCGT 20413 | | | |||||| | | | ||||| || ||||| Sbjct 1046 TCGTCAACGATCCGGCGATCGTATTTGATGATATCGT 1082 Score = 89.7 bits (98), Expect = 6e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 19468 GACTGGGAAGCGCTTCGTGCCGACATCATGAAATATGGTCTTCGTAACTCTACGTTGTCA 19527 ||||||||| || | ||| || ||| || || ||||| |||||||| || ||||| Sbjct 89 GACTGGGAAACGTTGCGTAAAGAGATCGTGGAAACCGGTCTGCGTAACTCCACCCTGTCA 148 Query 19528 GCGCTGATGCCTTGTGAATCAAGTTCACAGATCACCAACTCCACGAACGGTATCGAGCCG 19587 ||||||||||||| ||| | ||| ||||| ||||| |||| ||||| || ||||| Sbjct 149 GCGCTGATGCCTTCGGAAACCTCTTCGCAGATTTCCAACGCCACCAACGGCATTGAGCCA 208 Query 19588 CCTCGTCAGTTGCTGAGTGTAAAACAGTCTAAAGACGGT 19626 || ||| | ||| | ||| ||| ||||||||| Sbjct 209 CCACGTGGCCACATCAGTATCAAAGCGTCGAAAGACGGT 247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582627749503800