Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_028827.1 Length=50165 Score E Sequences producing significant alignments: (Bits) Value seq8597 116 1e-21 seq3694 91.5 5e-14 seq3417 84.2 7e-12 >seq8597 Length=531 Score = 116 bits (128), Expect = 1e-21 Identities = 165/228 (72%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 40174 GAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40233 |||||||| ||| | ||||||||| || || || || ||||| ||||| || ||||| | Sbjct 166 GAAGTCGACGTCGAAGTCGGGCATCGAAACACGTTCCGGGTTAAGGAAACGTTCGAACAG 225 Query 40234 GAGCCCGTGCTCCAGTGGATCGAGGTCGGTGATCCCGAG-GCAGTAGGCGACCAGCGAAC 40292 || | || || ||||| || |||||||| || ||| |||||||| | ||||| Sbjct 226 CAGGTCAAATTC-AGCGGATCAAGATCGGTGATTTTCAGCGCA-TAGGCGACTAACGAAC 283 Query 40293 CGGCTGCCGAGCCTCGCCCAGGACCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGA 40352 |||| | ||||| || || || || ||| |||| || || || | ||| ||||| Sbjct 284 CGGCACCGGAGCCACGGCCCGGGCCAACCGGCACGTTATTGTCTTTCGACCACTGGATGA 343 Query 40353 AGTCGGCGACGACCAGGAAGTAGGACGGGAAGCCCATCTGGATGATCA 40400 | || |||| ||||||||| ||||||||||||||| |||||| Sbjct 344 ACTCCATTACGATCAGGAAGTAACCTGGGAAGCCCATCTGGTTGATCA 391 >seq3694 Length=227 Score = 91.5 bits (100), Expect = 5e-14 Identities = 158/225 (70%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 40037 GGCTTGTCCAGCACGCGGGCCGCGTCCTTCATCGCGTTGCGCGCCTTGATCCGGCCGAAG 40096 ||| | | ||||||||| | |||| || | || |||||||| | | |||||| Sbjct 222 GGCATCTGCAGCACGCGCCCGACGTCGCGCAGCACGCCGCGCGCCTGCAGCGTTCCGAAG 163 Query 40097 GTCCCGATCTGTGC-GACCTTGTCGGCCCCGTACTTCTCGGTGACGTACCGGATGACCTC 40155 || |||||| || ||||| ||| ||||| ||| |||||| |||| ||||| Sbjct 162 GTGATGATCTGCGCCGACCTGATCGCGGCCGTAGCGCTCCTGCACGTAC-GGATCACCTC 104 Query 40156 GCCGCGACG--CCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGG 40213 |||||| || || | || |||||||||||| | ||| ||||| || ||||| || || Sbjct 103 GCCGCGGCGGTCCTGACA--GAAGTCGATGTCGAAGTCCGGCATCGAGACGCGTTCCGGA 46 Query 40214 TTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGTGGATCGAGG 40258 || ||||| |||||||| | || ||| | | ||||||||| Sbjct 45 TTGAGGAAGCGCTCGAACAGCAGACCGAACCGGATCGGATCGAGG 1 >seq3417 Length=361 Score = 84.2 bits (92), Expect = 7e-12 Identities = 127/181 (70%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 40250 GGATCGAGGTCGGTGATCCCGAGGCAGTAGGCGACCAGCGAACCGGCTGCCGAGCCTCGC 40309 || |||||||||||||| || ||||||||||||| || || ||||||| || Sbjct 336 GGGTCGAGGTCGGTGATGGTCAGCACCCAGGCGACCAGCGAGCCCGCACCCGAGCCGCGG 277 Query 40310 CCAGGACCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGG 40369 || || |||||| | ||| | | |||| ||||| ||||||||| | |||| ||| Sbjct 276 CCCGGTCCGACCGGAATGCCCTGCGCCTTCGCCCATTTGATGAAGTCCGACACGATCAGA 217 Query 40370 AAGTAGGACGGGAAGCCCATCTGGATGATCATGTCGATCTCGTACTGGAGCTGCTTGCCG 40429 |||||| || | | ||| || |||| | ||||| |||| | ||| |||||| | Sbjct 216 AAGTAGCCCGCGTATTTCATGCGGGTGATGACGTCGAGCTCGAAGGCAAGCCGCTTGCTG 157 Query 40430 T 40430 | Sbjct 156 T 156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160378092380814