Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_028892.1 Length=49949 Score E Sequences producing significant alignments: (Bits) Value seq8597 100 9e-17 seq3694 89.7 2e-13 >seq8597 Length=531 Score = 100 bits (110), Expect = 9e-17 Identities = 159/227 (70%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 39081 GAAGTCGATGTCCACGTCGGGCATGGAGACACGCTCAGGGTTCAGGAACCGCTCGAAGAT 39140 |||||||| ||| | ||||||||| || ||||| || ||||| ||||| || ||||| | Sbjct 166 GAAGTCGACGTCGAAGTCGGGCATCGAAACACGTTCCGGGTTAAGGAAACGTTCGAACAG 225 Query 39141 GAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCC 39200 || | | | || || || |||||||| || || || ||| | | ||| || Sbjct 226 CAGGTCAA-ATTCAGCGGATCAAGATCGGTGATTTTCAGCGCATAGGCGACTAACGAACC 284 Query 39201 AGCCGCAGAGCCGCGCCCAGGGCCGACCCACACGCCGTTCTCCTTCGCCCAGCCGATGAA 39260 || | ||||| || || ||||| ||| |||| || || |||| ||| |||||| Sbjct 285 GGCACCGGAGCCACGGCCCGGGCCAACCGGCACGTTATTGTCTTTCGACCACTGGATGAA 344 Query 39261 GTCGGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATCA 39307 || |||| |||||||| ||||| |||||||||||||||| Sbjct 345 CTCCATTACGATCAGGAAGTAACCTGGGAAGCCCATCTGGTTGATCA 391 >seq3694 Length=227 Score = 89.7 bits (98), Expect = 2e-13 Identities = 155/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 38944 GGCTTGTCCAGCACGCGGGCCGCGTCCTTCATCGCGTTGCGCGCCTTGATCCGTCCGTAC 39003 ||| | | ||||||||| | |||| || | || |||||||| | | |||| | Sbjct 222 GGCATCTGCAGCACGCGCCCGACGTCGCGCAGCACGCCGCGCGCCTGCAGCGTTCCGAAG 163 Query 39004 GTCGCGATCTGTGC-GACCTTGTCACTGCCGTACTTCTCGGTGACGTACCGGATCACGTC 39062 || |||||| || ||||| || | |||||| ||| |||||| ||||||| || Sbjct 162 GTGATGATCTGCGCCGACCTGATCGCGGCCGTAGCGCTCCTGCACGTAC-GGATCACCTC 104 Query 39063 GCCACGGCGACGGTCATCGAAGTCGATGTCCACGTCGGGCATGGAGACACGCTCAGGGTT 39122 ||| ||||| | | |||||||||||| | ||| ||||| ||||| || || || || Sbjct 103 GCCGCGGCGGTCCTGACAGAAGTCGATGTCGAAGTCCGGCATCGAGACGCGTTCCGGATT 44 Query 39123 CAGGAACCGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCAGG 39165 ||||| |||||||| | || ||| |||| || || ||| Sbjct 43 GAGGAAGCGCTCGAACAGCAGACCGAACCGGATCGGATCGAGG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159687014359902